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6WDI

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1b50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Escherichia coliLarge ribosomal subunit protein uL2
2c50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB
Escherichia coliLarge ribosomal subunit protein uL3
3d50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB
Escherichia coliLarge ribosomal subunit protein uL4
4e50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Escherichia coliLarge ribosomal subunit protein uL5
5f50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB
Escherichia coliLarge ribosomal subunit protein uL6
6g50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB
Escherichia coliLarge ribosomal subunit protein bL9
7h50S ribosomal protein L10polymer13114112.31UniProt (P0A7J3)
Pfam (PF00466)
In PDB
Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
8i50S ribosomal protein L11polymer14114763.21UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Escherichia coliLarge ribosomal subunit protein uL11
9j50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB
Escherichia coliLarge ribosomal subunit protein uL13
10k50S ribosomal protein L14polymer12213451.91UniProt (P0ADY3)
Pfam (PF00238)
In PDB
Escherichia coliLarge ribosomal subunit protein uL14
11l50S ribosomal protein L15polymer14314877.31UniProt (P02413)
Pfam (PF00828)
In PDB
Escherichia coliLarge ribosomal subunit protein uL15
12m50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB
Escherichia coliLarge ribosomal subunit protein uL16
13n50S ribosomal protein L17polymer12013721.91UniProt (P0AG44)
Pfam (PF01196)
In PDB
Escherichia coliLarge ribosomal subunit protein bL17
14o50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
In PDB
Escherichia coliLarge ribosomal subunit protein uL18
15p50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB
Escherichia coliLarge ribosomal subunit protein bL19
16q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB
Escherichia coliLarge ribosomal subunit protein bL20
17r50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB
Escherichia coliLarge ribosomal subunit protein bL21
18s50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB
Escherichia coliLarge ribosomal subunit protein uL22
19t50S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB
Escherichia coliLarge ribosomal subunit protein uL23
20u50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Escherichia coliLarge ribosomal subunit protein uL24
21v50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB
Escherichia coliLarge ribosomal subunit protein bL25
22w50S ribosomal protein L27polymer758174.41UniProt (P0A7L8)
Pfam (PF01016)
In PDB
Escherichia coliLarge ribosomal subunit protein bL27
23x50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB
Escherichia coliLarge ribosomal subunit protein bL28
24y50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB
Escherichia coliLarge ribosomal subunit protein uL29
25z50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB
Escherichia coliLarge ribosomal subunit protein uL30
26B50S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB
Escherichia coliLarge ribosomal subunit protein bL32
27C50S ribosomal protein L33polymer505814.81UniProt (P0A7N9)
Pfam (PF00471)
In PDB
Escherichia coliLarge ribosomal subunit protein bL33
28D50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB
Escherichia coliLarge ribosomal subunit protein bL34
29E50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB
Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
30F50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB
Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
31G30S ribosomal protein S2polymer22525015.81UniProt (P0A7V0)
Pfam (PF00318)
In PDB
Escherichia coliSmall ribosomal subunit protein uS2
32H30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Escherichia coliSmall ribosomal subunit protein uS3
33I30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF01479)
Pfam (PF00163)
In PDB
Escherichia coliSmall ribosomal subunit protein uS4
34J30S ribosomal protein S5polymer15716532.11UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Escherichia coliSmall ribosomal subunit protein uS5
35K30S ribosomal protein S6polymer10011669.41UniProt (P02358)
Pfam (PF01250)
In PDB
Escherichia coliSmall ribosomal subunit protein bS6
36L30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB
Escherichia coliSmall ribosomal subunit protein uS7
37M30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB
Escherichia coliSmall ribosomal subunit protein uS8
38N30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB
Escherichia coliSmall ribosomal subunit protein uS9
39O30S ribosomal protein S10polymer9811197.01UniProt (P0A7R5)
Pfam (PF00338)
In PDB
Escherichia coliSmall ribosomal subunit protein uS10
40P30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
In PDB
Escherichia coliSmall ribosomal subunit protein uS11
41Q30S ribosomal protein S12polymer12313637.01UniProt (P0A7S3)
Pfam (PF00164)
In PDB
Escherichia coliSmall ribosomal subunit protein uS12
42R30S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB
Escherichia coliSmall ribosomal subunit protein uS13
43S30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB
Escherichia coliSmall ribosomal subunit protein uS14
44T30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB
Escherichia coliSmall ribosomal subunit protein uS15
45U30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB
Escherichia coliSmall ribosomal subunit protein bS16
46V30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB
Escherichia coliSmall ribosomal subunit protein uS17
47W30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
In PDB
Escherichia coliSmall ribosomal subunit protein bS18
48X30S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
In PDB
Escherichia coliSmall ribosomal subunit protein uS19
49Y30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
In PDB
Escherichia coliSmall ribosomal subunit protein bS20
50Z30S ribosomal protein S21polymer657763.11UniProt (P68679)
Pfam (PF01165)
In PDB
Escherichia coliSmall ribosomal subunit protein bS21
51a50S ribosomal protein L1polymer22323735.51UniProt (P0A7L0)
Pfam (PF00687)
In PDB
Escherichia coliLarge ribosomal subunit protein uL1
52316S ribosomal RNApolymer1539498725.41GenBank (1126835768)Escherichia coli
53123S ribosomal RNApolymer2903941305.31GenBank (802133627)Escherichia coli
5425S ribosomal RNApolymer12038813.11GenBank (1266961702)Escherichia coli
555, 6tRNAfMetpolymer7724802.82GenBank (1275521620)Escherichia coli
564mRNApolymer185843.61Escherichia coli
577tRNAPhepolymer7624485.51GenBank (1275521620)Escherichia coli
585N-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
Sequence modifications
1: 1 - 2903 (GenBank: 802133627)
PDBExternal DatabaseDetails
C 747U 2724742conflict
2: 1 - 119 (GenBank: 1266961702)
PDBExternal DatabaseDetails
A 120-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2237680.0
Non-Polymers*Number of molecules1
Total formula weight177.2
All*Total formula weight2237857.2
*Water molecules are not included.

217705

PDB entries from 2024-03-27

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