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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6WD0

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1b50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
2c50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
3d50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
4e50S ribosomal protein L5polymer17720073.21UniProt (S1EUW9)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
5f50S ribosomal protein L6polymer17618801.61UniProt (A0A5B7PA13)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
6g50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
7h50S ribosomal protein L10polymer13114112.31UniProt (A0A073FNB4)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
8i50S ribosomal protein L11polymer14114763.21UniProt (S1ERR4)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
9j50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
10k50S ribosomal protein L14polymer12213451.91UniProt (U9YFU2)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
11l50S ribosomal protein L15polymer14314877.31UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
12m50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
13n50S ribosomal protein L17polymer12013721.91UniProt (A0A1X3LC97)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
14o50S ribosomal protein L18polymer11612663.51UniProt (F4TL27)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
15p50S ribosomal protein L19polymer11413028.11UniProt (A0A4P8C2I6)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
16q50S ribosomal protein L20polymer11713396.81UniProt (L3CCT0)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
17r50S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
18s50S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
19t50S ribosomal protein L23polymer9310546.51UniProt (D6I208)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
20u50S ribosomal protein L24polymer10211078.91UniProt (D7XKZ6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
21v50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
22w50S ribosomal protein L27polymer758174.41UniProt (A0A069XRX8)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli
23x50S ribosomal protein L28polymer778896.41UniProt (J7RMJ2)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
24y50S ribosomal protein L29polymer637286.51UniProt (D7Z9G3)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
25z50S ribosomal protein L30polymer586423.61UniProt (I2X1N4)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
26B50S ribosomal protein L32polymer566332.21UniProt (E3PJQ3)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
27C50S ribosomal protein L33polymer505814.81UniProt (L3NSS9)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
28D50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
29E50S ribosomal protein L35polymer647181.81UniProt (G0F552)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
30F50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
31G30S ribosomal protein S2polymer22525015.81UniProt (C3TPN2)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
32H30S ribosomal protein S3polymer20623078.81UniProt (A0A376HTV6)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
33I30S ribosomal protein S4polymer20523383.01UniProt (L3PZ69)
Pfam (PF01479)
Pfam (PF00163)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
34J30S ribosomal protein S5polymer15716532.11UniProt (F4TL26)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
35K30S ribosomal protein S6polymer10011669.41UniProt (S1CG62)
Pfam (PF01250)
UniProt (by SIFTS) (P02358)
In PDB		Escherichia coli
36L30S ribosomal protein S7polymer15116861.51UniProt (S1D5F0)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
37M30S ribosomal protein S8polymer12914015.41UniProt (D8A1L7)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
38N30S ribosomal protein S9polymer12714554.91UniProt (T9TH92)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
39O30S ribosomal protein S10polymer9811197.01UniProt (D7X302)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
40P30S ribosomal protein S11polymer11612388.11UniProt (I2UH22)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
41Q30S ribosomal protein S12polymer12313637.01UniProt (V6FZ95)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
42R30S ribosomal protein S13polymer11412625.81UniProt (A0A1X3KX08)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
43S30S ribosomal protein S14polymer10011475.41UniProt (I2X0X3)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
44T30S ribosomal protein S15polymer8810159.61UniProt (D7XN21)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
45U30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
46V30S ribosomal protein S17polymer809263.91UniProt (A0A080IK26)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
47W30S ribosomal protein S18polymer657606.81UniProt (A0A222QU44)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
48X30S ribosomal protein S19polymer799057.61UniProt (F4SQ43)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
49Y30S ribosomal protein S20polymer859506.21UniProt (T6N332)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
50Z30S ribosomal protein S21polymer657763.11UniProt (E9TH65)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
51a50S ribosomal protein L1polymer22323735.51UniProt (A0A4Y8DMK0)
Pfam (PF00687)
UniProt (by SIFTS) (P0A7L0)
In PDB		Escherichia coli
52316S ribosomal RNApolymer1539498725.41GenBank (1338015391)Escherichia coli
53123S ribosomal RNApolymer2903941305.31GenBank (1036415628)Escherichia coli
5425S ribosomal RNApolymer12038813.11GenBank (1370526515)Escherichia coli
555, 6tRNAfMetpolymer7724802.82GenBank (1384458579)Escherichia coli
564mRNApolymer185844.61Escherichia coli
575N-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
Sequence modifications
1: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325conflict
2: 1 - 119 (GenBank: 1370526515)
PDBExternal DatabaseDetails
A 120-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2213195.4
Non-Polymers*Number of molecules1
Total formula weight177.2
All*Total formula weight2213372.6
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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