6W2S
Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 18S rRNA | polymer | 1697 | 547733.1 | 1 | Oryctolagus cuniculus | ||
2 | 0 | CrPV 5'-UTR IRES | polymer | 377 | 121095.0 | 1 | GenBank (8895506) | Cricket paralysis virus | |
3 | B | uS2 | polymer | 295 | 33022.1 | 1 | UniProt (G1TWL4) Pfam (PF00318) Pfam (PF16122) UniProt (by SIFTS) (G1TLT8) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein SA |
4 | C | eS1 | polymer | 264 | 30002.1 | 1 | UniProt (G1SS70) Pfam (PF01015) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S3a |
5 | D | uS5 | polymer | 255 | 27529.2 | 1 | UniProt (G1SWM1) Pfam (PF00333) Pfam (PF03719) In PDB | Oryctolagus cuniculus (Rabbit) | S5 DRBM domain-containing protein |
6 | F | eS4 | polymer | 263 | 29596.8 | 1 | UniProt (G1TK17) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S4 |
7 | H | eS6 | polymer | 249 | 28751.9 | 1 | UniProt (G1TM55) Pfam (PF01092) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S6 |
8 | I | eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S7 |
9 | J | eS8 | polymer | 208 | 24263.4 | 1 | UniProt (G1TJW1) Pfam (PF01201) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S8 |
10 | K | uS4 | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S9 |
11 | M | uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S11 |
12 | O | uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S13 |
13 | P | uS11 | polymer | 151 | 16302.8 | 1 | UniProt (G1U472) Pfam (PF00411) UniProt (by SIFTS) (G1T1F0) In PDB | Oryctolagus cuniculus (Rabbit) | |
14 | W | eS21 | polymer | 83 | 9098.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
15 | X | uS8 | polymer | 130 | 14865.6 | 1 | UniProt (G1TG89) Pfam (PF00410) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S15a |
16 | Y | uS12 | polymer | 143 | 15784.5 | 1 | UniProt (G1SZ47) Pfam (PF00164) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S23 |
17 | Z | eS24 | polymer | 134 | 15548.4 | 1 | UniProt (G1T3D8) Pfam (PF01282) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S24 |
18 | b | eS26 | polymer | 115 | 13015.5 | 1 | UniProt (G1TFE8) Pfam (PF01283) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S26 |
19 | c | eS27 | polymer | 84 | 9480.2 | 1 | UniProt (G1TZ76) Pfam (PF01667) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S27 |
20 | f | eS30 | polymer | 133 | 14498.9 | 1 | UniProt (G1T8A2) Pfam (PF00240) Pfam (PF04758) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S30 |
21 | E | uS3 | polymer | 281 | 31146.6 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S3 |
22 | G | uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S5 |
23 | L | eS10 | polymer | 149 | 17156.9 | 1 | UniProt (G1TPV3) Pfam (PF03501) In PDB | Oryctolagus cuniculus (Rabbit) | |
24 | N | eS12 | polymer | 132 | 14539.0 | 1 | UniProt (G1SFR8) Pfam (PF01248) In PDB | Oryctolagus cuniculus (Rabbit) | 40S ribosomal protein S12 |
25 | Q | uS19 | polymer | 145 | 17049.2 | 1 | UniProt (G1U0Q2) Pfam (PF00203) In PDB | Oryctolagus cuniculus (Rabbit) | |
26 | R | uS9 | polymer | 172 | 19213.5 | 1 | UniProt (G1SGX4) Pfam (PF00380) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S16 |
27 | S | eS17 | polymer | 135 | 15552.1 | 1 | UniProt (G1TU13) Pfam (PF00833) In PDB | Oryctolagus cuniculus (Rabbit) | |
28 | T | uS13 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) In PDB | Oryctolagus cuniculus (Rabbit) | |
29 | U | eS19 | polymer | 145 | 16235.8 | 1 | UniProt (G1TN62) Pfam (PF01090) In PDB | Oryctolagus cuniculus (Rabbit) | |
30 | V | uS10 | polymer | 119 | 13398.8 | 1 | UniProt (G1SIZ2) Pfam (PF00338) In PDB | Oryctolagus cuniculus (Rabbit) | |
31 | a | eS25 | polymer | 125 | 13776.2 | 1 | UniProt (G1TDB3) Pfam (PF03297) In PDB | Oryctolagus cuniculus (Rabbit) | |
32 | d | eS28 | polymer | 69 | 7855.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S28 |
33 | e | eS29 | polymer | 56 | 6690.8 | 1 | UniProt (G1U7M4) Pfam (PF00253) In PDB | Oryctolagus cuniculus (Rabbit) | |
34 | g | eS31 | polymer | 156 | 18004.0 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) In PDB | Oryctolagus cuniculus (Rabbit) | Ribosomal protein S27a |
35 | h | RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (G1SJB4) Pfam (PF00400) In PDB | Oryctolagus cuniculus (Rabbit) | |
36 | 1 | Eukaryotic translation initiation factor 3 subunit A | polymer | 1362 | 164902.7 | 1 | UniProt (G1SMZ5) Pfam (PF22591) Pfam (PF01399) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3a,Eukaryotic translation initiation factor 3 subunit 10,eIF-3-theta |
37 | 2 | Eukaryotic translation initiation factor 3 subunit C | polymer | 913 | 105706.2 | 1 | UniProt (G1U971) Pfam (PF05470) Pfam (PF01399) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3c,Eukaryotic translation initiation factor 3 subunit 8,eIF3 p110 |
38 | 3 | Eukaryotic translation initiation factor 3 subunit E | polymer | 462 | 54199.9 | 1 | UniProt (G1SUC8) Pfam (PF09440) Pfam (PF01399) Pfam (PF21357) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3e,Eukaryotic translation initiation factor 3 subunit 6,eIF-3 p48 |
39 | 4 | Eukaryotic translation initiation factor 3 subunit F | polymer | 364 | 37846.7 | 1 | UniProt (G1SLC2) Pfam (PF01398) Pfam (PF13012) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3f,Eukaryotic translation initiation factor 3 subunit 5,eIF-3-epsilon,eIF3 p47 |
40 | 5 | Eukaryotic translation initiation factor 3 subunit H | polymer | 363 | 41083.5 | 1 | UniProt (G1ST95) Pfam (PF01398) Pfam (PF19445) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3h,Eukaryotic translation initiation factor 3 subunit 3,eIF-3 gamma,eIF3 p40 subunit |
41 | 6 | Eukaryotic translation initiation factor 3 subunit K | polymer | 218 | 25129.7 | 1 | UniProt (G1T3L2) Pfam (PF10075) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3k,Eukaryotic translation initiation factor 3 subunit 12,eIF-3 p25 |
42 | 7 | Eukaryotic translation initiation factor 3 subunit L | polymer | 607 | 71001.5 | 1 | UniProt (G1SED9) Pfam (PF10255) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3l,Eukaryotic translation initiation factor 3 subunit 6-interacting protein,Eukaryotic translation initiation factor 3 subunit E-interacting protein |
43 | 8 | Eukaryotic translation initiation factor 3 subunit M | polymer | 374 | 42555.8 | 1 | UniProt (G1SLW8) Pfam (PF01399) Pfam (PF18005) In PDB | Oryctolagus cuniculus (Rabbit) | eIF3m |
44 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
45 | b | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
0: 357 - 728 (GenBank: 8895506)
B: 1 - 295 (UniProt: G1TWL4)
D: 39 - 293 (UniProt: G1SWM1)
F: 1 - 263 (UniProt: G1TK17)
J: 1 - 208 (UniProt: G1TJW1)
b: 1 - 115 (UniProt: G1TFE8)
2: 1 - 913 (UniProt: G1U971)
PDB | External Database | Details |
---|---|---|
U 569 | C 569 | conflict |
U 570 | C 570 | conflict |
U 571 | A 571 | conflict |
U 572 | C 572 | conflict |
U 574 | C 574 | conflict |
U 575 | G 575 | conflict |
G 729 | - | expression tag |
G 730 | - | expression tag |
A 731 | - | expression tag |
U 732 | - | expression tag |
C 733 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Thr 114 | Ala 114 | conflict |
Thr 135 | Met 135 | conflict |
Arg 155 | His 155 | conflict |
Pro 162 | Leu 162 | conflict |
PDB | External Database | Details |
---|---|---|
Asn 57 | Asp 19 | conflict |
Phe 97 | Cys 59 | conflict |
Pro 181 | Leu 143 | conflict |
Val 191 | - | insertion |
PDB | External Database | Details |
---|---|---|
Gly 25 | Ser 25 | conflict |
Val 156 | Met 156 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 47 | Gly 47 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 28 | Cys 28 | conflict |
PDB | External Database | Details |
---|---|---|
Glu 671 | Val 671 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 43 |
Total formula weight | 1839959.1 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 89.7 | |
All* | Total formula weight | 1840048.8 |