6W1P

RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, U (A, a)	Photosystem II protein D1 1	polymer	334	37059.3	2	UniProt (P0A444) Pfam (PF00124)	Thermosynechococcus elongatus (strain BP-1)	PSII D1 protein 1,Photosystem II Q(B) protein 1
2	B, V (B, b)	Photosystem II CP47 reaction center protein	polymer	506	56228.0	2	UniProt (Q8DIQ1) Pfam (PF00421)	Thermosynechococcus elongatus (strain BP-1)	PSII 47 kDa protein,Protein CP-47
3	C, W (C, c)	Photosystem II CP43 reaction center protein	polymer	461	50287.5	2	UniProt (Q8DIF8) Pfam (PF00421)	Thermosynechococcus elongatus (strain BP-1)	PSII 43 kDa protein,Protein CP-43
4	D, X (D, d)	Photosystem II D2 protein	polymer	352	39388.2	2	UniProt (Q8CM25) Pfam (PF00124)	Thermosynechococcus elongatus (strain BP-1)	PSII D2 protein,Photosystem II Q(A) protein
5	E, Y (E, e)	Cytochrome b559 subunit alpha	polymer	84	9580.8	2	UniProt (Q8DIP0) Pfam (PF00283) Pfam (PF00284)	Thermosynechococcus elongatus (strain BP-1)	PSII reaction center subunit V
6	F, Z (F, f)	Cytochrome b559 subunit beta	polymer	45	5067.9	2	UniProt (Q8DIN9) Pfam (PF00283)	Thermosynechococcus elongatus (strain BP-1)	PSII reaction center subunit VI
7	AA, G (H, h)	Photosystem II reaction center protein H	polymer	66	7358.8	2	UniProt (Q8DJ43) Pfam (PF00737)	Thermosynechococcus elongatus (strain BP-1)	PSII-H
8	BA, H (I, i)	Photosystem II reaction center protein I	polymer	38	4438.3	2	UniProt (Q8DJZ6) Pfam (PF02532)	Thermosynechococcus elongatus (strain BP-1)	PSII-I,PSII 4.4 kDa protein
9	CA, I (J, j)	Photosystem II reaction center protein J	polymer	40	4105.9	2	UniProt (P59087) Pfam (PF01788)	Thermosynechococcus elongatus (strain BP-1)	PSII-J
10	DA, J (K, k)	Photosystem II reaction center protein K	polymer	46	5028.1	2	UniProt (Q9F1K9) Pfam (PF02533)	Thermosynechococcus elongatus (strain BP-1)	PSII-K
11	EA, K (L, l)	Photosystem II reaction center protein L	polymer	37	4299.0	2	UniProt (Q8DIN8) Pfam (PF02419)	Thermosynechococcus elongatus (strain BP-1)	PSII-L
12	FA, L (M, m)	Photosystem II reaction center protein M	polymer	36	4009.7	2	UniProt (Q8DHA7) Pfam (PF05151)	Thermosynechococcus elongatus (strain BP-1)	PSII-M
13	GA, M (O, o)	Photosystem II manganese-stabilizing polypeptide	polymer	272	29637.4	2	UniProt (P0A431) Pfam (PF01716)	Thermosynechococcus elongatus (strain BP-1)	MSP
14	HA, N (R, r)	Photosystem II protein Y	polymer	40	4459.5	2	UniProt (Q8DKM3) Pfam (PF06298)	Thermosynechococcus elongatus (strain BP-1)
15	IA, O (T, t)	Photosystem II reaction center protein T	polymer	30	3648.4	2	UniProt (Q8DIQ0) Pfam (PF01405)	Thermosynechococcus elongatus (strain BP-1)	PSII-Tc
16	JA, P (U, u)	Photosystem II 12 kDa extrinsic protein	polymer	134	15031.0	2	UniProt (Q9F1L5) Pfam (PF06514)	Thermosynechococcus elongatus (strain BP-1)	PS II complex 12 kDa extrinsic protein,PSII-U
17	KA, Q (V, v)	Cytochrome c-550	polymer	163	18046.9	2	UniProt (P0A386) Pfam (PF14495)	Thermosynechococcus elongatus (strain BP-1)	Cytochrome c-549,Cytochrome c550,Low-potential cytochrome c
18	LA, R (X, x)	Photosystem II reaction center X protein	polymer	41	4322.2	2	UniProt (Q9F1R6) Pfam (PF06596)	Thermosynechococcus elongatus (strain BP-1)
19	MA, S (Y, y)	Photosystem II reaction center protein Ycf12	polymer	46	5039.1	2	UniProt (Q8DJI1) Pfam (PF05969)	Thermosynechococcus elongatus (strain BP-1)
20	NA, T (Z, z)	Photosystem II reaction center protein Z	polymer	62	6766.2	2	UniProt (Q8DHJ2) Pfam (PF01737)	Thermosynechococcus elongatus (strain BP-1)	PSII-Z
21	IE, OA (a, A)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2)
22	AF, AG, BF, BG, CD... (b, c, D, B, C...)	CHLOROPHYLL A	non-polymer		893.5	70	Chemie (CLA)
23	BD, LE, RA, TG (D, a, A, d)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
24	CE, FC, FD, GE, KG... (T, C, D, Z, c...)	BETA-CAROTENE	non-polymer		536.9	22	Chemie (BCR)
25	OE, PE, UA, VA (a, A)	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL)
26	QE, WA (a, A)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT)
27	GD, RE, XA, YG (D, a, A, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9)
28	AB, AH, BH, ID, MH... (A, d, D, l, a...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	10	Chemie (LHG)
29	AC, BB, FH, OD, SE... (B, A, f, F, a...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	8	Chemie (SQD)
30	CB, GH, MG, NG, OG... (A, h, c, H, C)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	9	Chemie (DGD)
31	DB, WE (A, a)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
32	AD, AE, BC, BE, CC... (C, M, B, T, d...)	STEARIC ACID	non-polymer		284.5	35	Chemie (STE)
33	CH, EC, FE, HD, JD... (d, B, Y, D, m...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	13	Chemie (LMG)
34	EE, EH, MD, SH (V, e, E, v)	HEME C	non-polymer		618.5	4	Chemie (HEC)
35	AI, AJ, BI, BJ, CI... (F, m, H, o, I...)	water	water		18.0	1582	Chemie (HOH)

Sequence modifications

I, i: 2 - 38 (UniProt: Q8DJZ6)

PDB	External Database	Details
Fme 1	-	initiating methionine

M, m: 2 - 36 (UniProt: Q8DHA7)

PDB	External Database	Details
Fme 1	-	initiating methionine

T, t: 2 - 30 (UniProt: Q8DIQ0)

PDB	External Database	Details
Fme 1	-	initiating methionine

Contents of the asymmetric unit

Polymers	Number of chains	40
	Total formula weight	627604.2
Non-Polymers*	Number of molecules	189
	Total formula weight	126690.3
All*	Total formula weight	754294.5

*Water molecules are not included.