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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6VZJ

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
2150S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
3250S ribosomal protein L23polymer10011222.21UniProt (D7X2Z9)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
4350S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
5450S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
65NT DNApolymer3611042.11synthetic construct
76T DNApolymer3610956.01synthetic construct
87mRNA with 27 nt long spacerpolymer3210156.81synthetic construct
9950S ribosomal protein L10polymer16517736.61UniProt (D7ZA73)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
10A, BE-site and P-site tRNA (fMet)polymer7624496.62GenBank (1848959854)Escherichia coli
11AADNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V4)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
Pfam (PF04563)
UniProt (by SIFTS) (P0A8V2)
In PDB		Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
12AC, ADDNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (A0A073G207)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
UniProt (by SIFTS) (P0A7Z4)
In PDB		Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
13AEDNA-directed RNA polymerase subunit beta'polymer1407155398.91UniProt (A0A4S1NBU2)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
UniProt (by SIFTS) (P0A8T7)
In PDB		Escherichia coliRNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
14C30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
15D16S rRNApolymer1542499690.01GenBank (1732209707)Escherichia coli
16E30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
17F30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
18G30S ribosomal protein S2polymer24126781.71UniProt (D7ZK99)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
19H30S ribosomal protein S1polymer55761238.91UniProt (D6HUW2)
Pfam (PF00575)
UniProt (by SIFTS) (P0AG67)
In PDB		Escherichia coli
20I30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
21J30S ribosomal protein S4polymer20523383.01UniProt (L3PZ69)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
22K30S ribosomal protein S5polymer16717629.41UniProt (D7Z9H2)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
23L30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
24M30S ribosomal protein S7polymer15116861.51UniProt (S1D5F0)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
25N30S ribosomal protein S8polymer12914015.41UniProt (D8A1L7)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
26O30S ribosomal protein S9polymer12714554.91UniProt (T9TH92)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
27P30S ribosomal protein S10polymer9911254.01UniProt (I2X6I5)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
28Q30S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
29R30S ribosomal protein S12polymer12313637.01UniProt (I2UHF1)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
30S30S ribosomal protein S14polymer10111606.61UniProt (D7Z9G8)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
31T30S ribosomal protein S15polymer8910290.81UniProt (D7ZEL4)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
32U30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
33V30S ribosomal protein S17polymer849724.51UniProt (D7Z9G4)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
34W30S ribosomal protein S19polymer839421.01UniProt (S1EA57)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
35X30S ribosomal protein S13polymer11612868.11UniProt (A0A0H3ML81)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
36Y50S ribosomal protein L11polymer14114763.21UniProt (S1CRY3)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
37Z50S ribosomal protein L7/L12polymer12112309.21UniProt (V0AEG5)
Pfam (PF16320)
Pfam (PF00542)
UniProt (by SIFTS) (P0A7K2)
In PDB		Escherichia coli
38a23S rRNApolymer2904941635.41GenBank (937521852)Escherichia coli
39b50S ribosomal protein L27polymer768275.51UniProt (I2X5R7)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli
40c50S ribosomal protein L28polymer789027.61UniProt (S0YB49)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
41d5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
42e50S ribosomal protein L29polymer627155.31UniProt (I2X6R6)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
43f50S ribosomal protein L30polymer586423.61UniProt (A0A073FR56)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
44g50S ribosomal protein L31polymer667516.71UniProt (V0YYV3)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
45h50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
46i50S ribosomal protein L32polymer566332.21UniProt (D7XI28)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
47j50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
48k50S ribosomal protein L33polymer556388.61UniProt (D7Z9P0)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
49l50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
50m50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
51n50S ribosomal protein L5polymer17720073.21UniProt (T6LFZ6)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
52o50S ribosomal protein L35polymer647181.81UniProt (A0A0A0FFH2)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
53p50S ribosomal protein L6polymer17518672.41UniProt (E9YV47)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
54q50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
55r50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
56s50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
57t50S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
58u50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
59v50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
60w50S ribosomal protein L17polymer11913592.81UniProt (A0A2T1LEK9)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
61x50S ribosomal protein L18polymer11612663.51UniProt (H4JDL8)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
62y50S ribosomal protein L19polymer11413028.11UniProt (A0A069XKC0)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
63z50S ribosomal protein L20polymer11713396.81UniProt (V6FS92)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
64AEMAGNESIUM IONnon-polymer24.31Chemie (MG)
65AEZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
A, B: 1 - 76 (GenBank: 1848959854)
PDBExternal DatabaseDetails
-U 3233201deletion
a: 1 - 2904 (GenBank: 937521852)
PDBExternal DatabaseDetails
A 887U 472128conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains65
Total formula weight2695773.5
Non-Polymers*Number of molecules3
Total formula weight155.1
All*Total formula weight2695928.6
*Water molecules are not included.

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PDB entries from 2024-07-17

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