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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6VYR

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
2150S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
3250S ribosomal protein L23polymer10011222.21UniProt (D7X2Z9)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
4350S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
5450S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
65NT DNApolymer3611042.11synthetic construct
76T DNApolymer3610956.01synthetic construct
87mRNA with 18 nt long spacerpolymer3511075.31synthetic construct
9950S ribosomal protein L10polymer16517736.61UniProt (D7ZA73)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
10A, BE-site and P-site tRNA (fMet)polymer7624496.62GenBank (1384458579)Escherichia coli
11AADNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V4)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
Pfam (PF04563)
UniProt (by SIFTS) (P0A8V2)
In PDB		Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
12ABTranscription termination/antitermination protein NusGpolymer18120560.51UniProt (U9XYQ6)
Pfam (PF02357)
Pfam (PF00467)
UniProt (by SIFTS) (P0AFG0)
In PDB		Escherichia coli
13AC, ADDNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (A0A073G207)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
UniProt (by SIFTS) (P0A7Z4)
In PDB		Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
14AEDNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (A0A4S1NBU2)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
UniProt (by SIFTS) (P0A8T7)
In PDB		Escherichia coliRNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
15C30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
16D16S rRNApolymer1542499690.01GenBank (1732209707)Escherichia coli
17E30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
18F30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
19G30S ribosomal protein S2polymer24126781.71UniProt (D7ZK99)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
20H30S ribosomal protein S1polymer55761238.91UniProt (D6HUW2)
Pfam (PF00575)
UniProt (by SIFTS) (P0AG67)
In PDB		Escherichia coli
21I30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
22J30S ribosomal protein S4polymer20623514.21UniProt (D7Z9H7)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
23K30S ribosomal protein S5polymer16717629.41UniProt (D7Z9H2)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
24L30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
25M30S ribosomal protein S7polymer17920055.21UniProt (A0A5Q2GFB5)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
26N30S ribosomal protein S8polymer13014146.61UniProt (D7Z9G9)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
27O30S ribosomal protein S9polymer13014886.31UniProt (D7ZES9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
28P30S ribosomal protein S10polymer10311755.61UniProt (D7Z9F4)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
29Q30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
30R30S ribosomal protein S12polymer12413768.21UniProt (D7ZAN0)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
31S30S ribosomal protein S14polymer10111606.61UniProt (D7Z9G8)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
32T30S ribosomal protein S15polymer8910290.81UniProt (D7ZEL4)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
33U30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
34V30S ribosomal protein S17polymer849724.51UniProt (D7Z9G4)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
35W30S ribosomal protein S19polymer9210455.41UniProt (D7Z9F9)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
36X30S ribosomal protein S13polymer11813128.51UniProt (H4UQ02)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
37Y50S ribosomal protein L11polymer14214894.41UniProt (D7ZA71)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
38Z50S ribosomal protein L7/L12polymer12112309.21UniProt (V0AEG5)
Pfam (PF16320)
Pfam (PF00542)
UniProt (by SIFTS) (P0A7K2)
In PDB		Escherichia coli
39a23S rRNApolymer2904941635.41GenBank (937521852)Escherichia coli
40b50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
41c50S ribosomal protein L28polymer789027.61UniProt (S0YB49)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
42d5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
43e50S ribosomal protein L29polymer637286.51UniProt (D7Z9G3)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
44f50S ribosomal protein L30polymer596554.81UniProt (D7Z9H3)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
45g50S ribosomal protein L31polymer707887.11UniProt (D7ZFP6)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
46h50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
47i50S ribosomal protein L32polymer576463.41UniProt (D7ZGG2)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
48j50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
49k50S ribosomal protein L33polymer556388.61UniProt (D7Z9P0)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
50l50S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
51m50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
52n50S ribosomal protein L5polymer17920333.61UniProt (D7Z9G7)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
53o50S ribosomal protein L35polymer657313.01UniProt (D7Z814)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
54p50S ribosomal protein L6polymer17718932.81UniProt (D7Z9H0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
55q50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
56r50S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
57s50S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
58t50S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
59u50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
60v50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
61w50S ribosomal protein L17polymer12714393.71UniProt (D6I1Y5)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
62x50S ribosomal protein L18polymer11712794.71UniProt (D7Z9H1)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
63y50S ribosomal protein L19polymer11513159.31UniProt (D7ZKU3)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
64z50S ribosomal protein L20polymer11813528.01UniProt (L3CCT0)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
65AEMAGNESIUM IONnon-polymer24.31Chemie (MG)
66AEZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
AE: 1 - 1407 (UniProt: A0A4S1NBU2)
PDBExternal DatabaseDetails
Val 1384Met 1384variant
a: 1 - 2904 (GenBank: 937521852)
PDBExternal DatabaseDetails
A 887U 472128variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains66
Total formula weight2728192.1
Non-Polymers*Number of molecules3
Total formula weight155.1
All*Total formula weight2728347.2
*Water molecules are not included.

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PDB entries from 2024-05-01

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