6VY2
Cryo-EM structure of M1214_N1 Fab in complex with CH505 TF chimeric SOSIP.664 Env trimer
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E | Glycoprotein 120 | polymer | 487 | 54540.4 | 3 | UniProt (A0A0A7I3C6) Pfam (PF00516) In PDB | Human immunodeficiency virus 1 | Surface protein gp120, SU, gp120 |
2 | B, D, F | Glycoprotein 41 | polymer | 160 | 18146.7 | 3 | UniProt (Q2N0S5) Pfam (PF00517) In PDB | Human immunodeficiency virus 1 | Transmembrane protein gp41, TM, gp41 |
3 | H, I, J | M1214 N1 Fab heavy chain | polymer | 226 | 24210.1 | 3 | Homo sapiens (Human) | ||
4 | L, M, N | M1214 N1 Fab light chain | polymer | 214 | 22876.4 | 3 | Homo sapiens (Human) | ||
5 | b, c, 2, d, f... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
6 | a, 0, 1, 3, e... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 21 | In PDB GlyTouCan (G15407YE) | |||
7 | g, Q, w | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G94626GC) | |||
8 | i, S, y | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
9 | j, T, z | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
10 | 4, o, Y | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 3 | In PDB GlyTouCan (G84881ST) | |||
11 | E, F, A, B, C... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
A, C, E: 35 - 506 (UniProt: A0A0A7I3C6)
B, D, F: 511 - 664 (UniProt: Q2N0S5)
PDB | External Database | Details |
---|---|---|
Met 7 | - | initiating methionine |
Pro 8 | - | expression tag |
Met 9 | - | expression tag |
Gly 10 | - | expression tag |
Ser 11 | - | expression tag |
Leu 12 | - | expression tag |
Gln 13 | - | expression tag |
Pro 14 | - | expression tag |
Leu 15 | - | expression tag |
Ala 16 | - | expression tag |
Thr 17 | - | expression tag |
Leu 18 | - | expression tag |
Tyr 19 | - | expression tag |
Leu 20 | - | expression tag |
Leu 21 | - | expression tag |
Gly 22 | - | expression tag |
Met 23 | - | expression tag |
Leu 24 | - | expression tag |
Val 25 | - | expression tag |
Ala 26 | - | expression tag |
Ser 27 | - | expression tag |
Val 28 | - | expression tag |
Leu 29 | - | expression tag |
Ala 30 | - | expression tag |
Ala 31 | - | expression tag |
Glu 32 | - | expression tag |
Asn 33 | - | expression tag |
Leu 34 | - | expression tag |
Lys 64 | Glu 60 | conflict |
Trp 316 | Ala 301 | conflict |
Lys 490 | Glu 473 | conflict |
Ile 491 | Val 474 | conflict |
Glu 492 | Lys 475 | conflict |
Arg 500 | Asn 483 | conflict |
Cys 501 | Ala 484 | conflict |
Lys 502 | Arg 485 | conflict |
PDB | External Database | Details |
---|---|---|
Gly 505 | - | expression tag |
Arg 506 | - | expression tag |
Arg 507 | - | expression tag |
Arg 508 | - | expression tag |
Arg 509 | - | expression tag |
Arg 510 | - | expression tag |
Pro 559 | Ile 556 | conflict |
Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 359321.0 | |
Branched | Number of molecules | 48 |
Total formula weight | 30099.7 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 5309.0 | |
All* | Total formula weight | 394729.7 |