6VPX
Nanodisc of full-length HIV-1 Envelope glycoprotein clone AMC011 in complex with one PGT151 Fab and three 10E8 Fabs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, E, C) | Envelope glycoprotein gp120 | polymer | 465 | 51997.1 | 3 | Pfam (PF00516) UniProt (by SIFTS) (B9V6B3) | Human immunodeficiency virus 1 | |
| 2 | D, E, F (D, B, F) | Envelope glycoprotein gp41 | polymer | 153 | 17298.6 | 3 | Pfam (PF00517) UniProt (by SIFTS) (B0FAM5) | Human immunodeficiency virus 1 | |
| 3 | G, J, M (H, K, M) | Antibody 10E8 Fab heavy chain | polymer | 129 | 14433.1 | 3 | Homo sapiens (Human) | ||
| 4 | H, K, N (L, N, O) | Antibody 10E8 Fab light chain | polymer | 108 | 11585.8 | 3 | Homo sapiens (Human) | ||
| 5 | I, L, O (G, I, J) | MPER peptide | polymer | 17 | 2147.5 | 3 | UniProt (by SIFTS) (P05880) | Homo sapiens (Human) | |
| 6 | P (P) | Antibody PGT151 Fab heavy chain | polymer | 134 | 15090.0 | 1 | Homo sapiens (Human) | ||
| 7 | Q (Q) | Antibody PGT151 Fab light chain | polymer | 109 | 11940.4 | 1 | Homo sapiens (Human) | ||
| 8 | AA, BA, DA, EA, FA... (a, b, d, e, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 9 | S (S) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G35932AR) | |||
| 10 | W (W) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 11 | CA, Y (c, Y) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 12 | GA (g) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 13 | HA, NA (h, n) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 2 | In PDB GlyTouCan (G86851RC) | |||
| 14 | JA, KA (j, k) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
| 15 | LA (l) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1625.5 | 1 | In PDB GlyTouCan (G42672MA) | |||
| 16 | MA (m) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1422.3 | 1 | In PDB GlyTouCan (G04744XB) | |||
| 17 | AB, AC, BB, BC, CB... (E, D, F, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 43 | Chemie (NAG) | |||
| 18 | FC, GC, HC (L, N, O) | (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate | non-polymer | 368.4 | 3 | Chemie (44E) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 17 |
| Total formula weight | 319416.7 | |
| Branched | Number of molecules | 23 |
| Total formula weight | 13273.4 | |
| Non-Polymers* | Number of molecules | 46 |
| Total formula weight | 10617.0 | |
| All* | Total formula weight | 343307.1 |
