6VN0

BG505 SOSIP.v4.1 in complex with rhesus macaque Fab RM20F

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, E, I (A, C, D)	Envelope glycoprotein gp160	polymer	475	53236.3	3	UniProt (Q2N0S6)	Human immunodeficiency virus 1	Env polyprotein
2	B, F, J (B, E, F)	Envelope glycoprotein gp41	polymer	153	17146.5	3	UniProt (Q2N0S6)	Human immunodeficiency virus 1
3	C, G, K (H, G, I)	RM20F Fab Heavy Chain	polymer	126	13732.3	3		Macaca mulatta
4	D, H, L (L, J, K)	RM20F Kappa Chain	polymer	107	11585.9	3		Macaca mulatta
5	BA, IA, M, MA, Q... (b, i, M, m, Q...)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		910.8	6	In PDB GlyTouCan (G22768VO)
6	AA, CA, DA, EA, FA... (a, c, d, e, f...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	27	In PDB GlyTouCan (G42666HT)
7	AB, BB, CB, DB, EB... (C, E, D, F, A...)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	21	Chemie (NAG)

Sequence modifications

A, C, D: 31 - 507 (UniProt: Q2N0S6)

PDB	External Database	Details
Lys 64	Glu 63	conflict
Trp 316	Ala 313	conflict
Asn 332	Thr 330	conflict
Cys 501	Ala 498	conflict

B, E, F: 512 - 664 (UniProt: Q2N0S6)

PDB	External Database	Details
Pro 559	Ile 556	conflict
Cys 605	Thr 602	conflict

Contents of the asymmetric unit

Polymers	Number of chains	12
	Total formula weight	287103.1
Branched	Number of molecules	33
	Total formula weight	16923.8
Non-Polymers*	Number of molecules	21
	Total formula weight	4645.4
All*	Total formula weight	308672.2

*Water molecules are not included.