6VN0
BG505 SOSIP.v4.1 in complex with rhesus macaque Fab RM20F
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, D | Envelope glycoprotein gp160 | polymer | 475 | 53236.3 | 3 | UniProt (Q2N0S6) Pfam (PF00516) In PDB | Human immunodeficiency virus 1 | Env polyprotein |
2 | B, E, F | Envelope glycoprotein gp41 | polymer | 153 | 17146.5 | 3 | UniProt (Q2N0S6) Pfam (PF00517) In PDB | Human immunodeficiency virus 1 | |
3 | H, G, I | RM20F Fab Heavy Chain | polymer | 126 | 13732.3 | 3 | Macaca mulatta | ||
4 | L, J, K | RM20F Kappa Chain | polymer | 107 | 11585.9 | 3 | Macaca mulatta | ||
5 | b, i, M, m, Q... | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 6 | In PDB GlyTouCan (G22768VO) | |||
6 | a, c, d, e, f... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 27 | In PDB GlyTouCan (G42666HT) | |||
7 | C, E, D, F, A... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, C, D: 31 - 507 (UniProt: Q2N0S6)
B, E, F: 512 - 664 (UniProt: Q2N0S6)
PDB | External Database | Details |
---|---|---|
Lys 64 | Glu 63 | conflict |
Trp 316 | Ala 313 | conflict |
Asn 332 | Thr 330 | conflict |
Cys 501 | Ala 498 | conflict |
PDB | External Database | Details |
---|---|---|
Pro 559 | Ile 556 | conflict |
Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 287103.1 | |
Branched | Number of molecules | 33 |
Total formula weight | 16923.8 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 4645.4 | |
All* | Total formula weight | 308672.2 |