6VFV
Crystal structure of human protocadherin 8 EC5-EC6
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Protocadherin-8 | polymer | 229 | 24599.2 | 1 | UniProt (O95206) Pfam (PF00028) | Homo sapiens (Human) | Arcadlin |
| 2 | B (B) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
| 3 | C (A) | alpha-D-mannopyranose | non-polymer | 180.2 | 1 | Chemie (MAN) | |||
| 4 | D, E, F, G (A) | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
| 5 | H (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 6 | I (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 7 | J (A) | water | water | 18.0 | 7 | Chemie (HOH) |
Sequence modifications
A: 461 - 683 (UniProt: O95206)
| PDB | External Database | Details |
|---|---|---|
| His 684 | - | expression tag |
| His 685 | - | expression tag |
| His 686 | - | expression tag |
| His 687 | - | expression tag |
| His 688 | - | expression tag |
| His 689 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 24599.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 894.8 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 438.0 | |
| All* | Total formula weight | 25932.1 |
