6VFT

Crystal structure of human delta protocadherin 17 EC1-EC4

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D	Protocadherin-17	polymer	453	48948.2	4	UniProt (O14917) Pfam (PF08266) Pfam (PF00028) In PDB	Homo sapiens (Human)	Protocadherin-68
2	E, F	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		570.5	2	In PDB GlyTouCan (G21290RB)
3	G, L	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
4	H, K	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		732.7	2	In PDB GlyTouCan (G32152BH)
5	I	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	1	In PDB GlyTouCan (G15407YE)
6	J	alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		894.8	1	In PDB GlyTouCan (G00395TQ)
7	B, D, C, A	CALCIUM ION	non-polymer		40.1	40	Chemie (CA)
8	B, D, C, A	alpha-D-mannopyranose	non-polymer		180.2	8	Chemie (MAN)
9	B, C	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	3	Chemie (NAG)
10		water	water		18.0	6	Chemie (HOH)

Sequence modifications

A, B, C, D: 1 - 447 (UniProt: O14917)

PDB	External Database	Details
His 448	-	expression tag
His 449	-	expression tag
His 450	-	expression tag
His 451	-	expression tag
His 452	-	expression tag
His 453	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	195792.7
Branched	Number of molecules	8
	Total formula weight	4936.6
Non-Polymers*	Number of molecules	51
	Total formula weight	3708.0
All*	Total formula weight	204437.3

*Water molecules are not included.