6VFT
Crystal structure of human delta protocadherin 17 EC1-EC4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Protocadherin-17 | polymer | 453 | 48948.2 | 4 | UniProt (O14917) Pfam (PF08266) Pfam (PF00028) | Homo sapiens (Human) | Protocadherin-68 |
| 2 | E, F (E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
| 3 | G, L (G, L) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | H, K (H, K) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 2 | In PDB GlyTouCan (G32152BH) | |||
| 5 | I (I) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | J (J) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
| 7 | AA, AB, BA, BB, CA... (B, D, C, A) | CALCIUM ION | non-polymer | 40.1 | 40 | Chemie (CA) | |||
| 8 | HA, IA, IB, JB, UA... (B, D, C, A) | alpha-D-mannopyranose | non-polymer | 180.2 | 8 | Chemie (MAN) | |||
| 9 | JA, WA, XA (B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 10 | LB, MB, NB (A, B, D) | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 447 (UniProt: O14917)
| PDB | External Database | Details |
|---|---|---|
| His 448 | - | expression tag |
| His 449 | - | expression tag |
| His 450 | - | expression tag |
| His 451 | - | expression tag |
| His 452 | - | expression tag |
| His 453 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 195792.7 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 4936.6 | |
| Non-Polymers* | Number of molecules | 51 |
| Total formula weight | 3708.0 | |
| All* | Total formula weight | 204437.3 |
