6V3B
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L33 | polymer | 51 | 6105.3 | 1 | UniProt (N9PPR9) | Acinetobacter sp. CIP 51.11 | |
| 2 | B (1) | 50S ribosomal protein L34 | polymer | 44 | 5192.2 | 1 | UniProt (N9DYI8) Pfam (PF00468) | Acinetobacter beijerinckii ANC 3835 | |
| 3 | C (2) | 50S ribosomal protein L35 | polymer | 64 | 7424.1 | 1 | UniProt (B7I693) Pfam (PF01632) | Acinetobacter baumannii (strain AB0057) | |
| 4 | D (3) | 50S ribosomal protein L36 | polymer | 38 | 4276.2 | 1 | UniProt (A0A1Y3CHB1) Pfam (PF00444) | Acinetobacter sp. ANC 4470 | |
| 5 | E (AN1) | 23s ribosomal RNA | polymer | 2918 | 945299.3 | 1 | Acinetobacter baumannii AB0057 | ||
| 6 | F (B) | 5s ribosomal RNA | polymer | 115 | 36997.0 | 1 | GenBank (1360860747) | Acinetobacter baumannii | |
| 7 | G (C) | 50S ribosomal protein L2 | polymer | 274 | 30346.1 | 1 | UniProt (B7IA36) Pfam (PF00181) Pfam (PF03947) | Acinetobacter baumannii (strain AB0057) | |
| 8 | H (D) | 50S ribosomal protein L3 | polymer | 212 | 22512.6 | 1 | UniProt (B7IA39) Pfam (PF00297) | Acinetobacter baumannii (strain AB0057) | |
| 9 | I (E) | 50S ribosomal protein L4 | polymer | 200 | 21583.9 | 1 | UniProt (B7IA38) Pfam (PF00573) | Acinetobacter baumannii (strain AB0057) | |
| 10 | J (F) | 50S ribosomal protein L5 | polymer | 178 | 20051.5 | 1 | UniProt (B7IA27) Pfam (PF00281) Pfam (PF00673) | Acinetobacter baumannii (strain AB0057) | |
| 11 | K (G) | 50S ribosomal protein L6 | polymer | 177 | 19126.0 | 1 | UniProt (B7IA24) Pfam (PF00347) | Acinetobacter baumannii (strain AB0057) | |
| 12 | L (H) | 50S ribosomal protein L9 | polymer | 148 | 15801.0 | 1 | UniProt (B7IBC3) Pfam (PF01281) Pfam (PF03948) | Acinetobacter baumannii (strain AB0057) | |
| 13 | M (I) | 50S ribosomal protein L13 | polymer | 142 | 15981.5 | 1 | UniProt (B7I9B0) Pfam (PF00572) | Acinetobacter baumannii (strain AB0057) | |
| 14 | N (J) | 50S ribosomal protein L14 | polymer | 122 | 13523.9 | 1 | UniProt (N8WQT6) Pfam (PF00238) UniProt (by SIFTS) (N9NZ44) | Acinetobacter sp. NIPH 899 | |
| 15 | O (K) | 50S ribosomal protein L15 | polymer | 146 | 15509.9 | 1 | UniProt (B7IA20) Pfam (PF00828) | Acinetobacter baumannii (strain AB0057) | |
| 16 | P (L) | 50S ribosomal protein L16 | polymer | 137 | 15498.3 | 1 | UniProt (B7IA32) Pfam (PF00252) | Acinetobacter baumannii (strain AB0057) | |
| 17 | Q (M) | 50S ribosomal protein L17 | polymer | 125 | 14022.2 | 1 | UniProt (B7IA13) Pfam (PF01196) | Acinetobacter baumannii (strain AB0057) | |
| 18 | R (N) | 50S ribosomal protein L18 | polymer | 116 | 12443.3 | 1 | UniProt (B7IA23) Pfam (PF00861) | Acinetobacter baumannii (strain AB0057) | |
| 19 | S (O) | 50S ribosomal protein L19 | polymer | 122 | 13619.9 | 1 | UniProt (B7IAS9) Pfam (PF01245) | Acinetobacter baumannii (strain AB0057) | |
| 20 | T (P) | 50S ribosomal protein L20 | polymer | 119 | 13468.9 | 1 | UniProt (V5VGC9) Pfam (PF00453) | Acinetobacter baumannii | |
| 21 | U (Q) | 50S ribosomal protein L21 | polymer | 103 | 11496.4 | 1 | UniProt (B7I6V9) Pfam (PF00829) | Acinetobacter baumannii (strain AB0057) | |
| 22 | V (R) | 50S ribosomal protein L22 | polymer | 109 | 11828.9 | 1 | UniProt (A0A009QSN8) Pfam (PF00237) | Acinetobacter sp. 809848 | |
| 23 | W (S) | 50S ribosomal protein L23 | polymer | 106 | 11607.4 | 1 | UniProt (B7IA37) Pfam (PF00276) | Acinetobacter baumannii (strain AB0057) | |
| 24 | X (T) | 50S ribosomal protein L24 | polymer | 105 | 11187.9 | 1 | UniProt (B7IA28) Pfam (PF00467) Pfam (PF17136) | Acinetobacter baumannii (strain AB0057) | |
| 25 | Y (U) | 50S ribosomal protein L25 | polymer | 98 | 10942.6 | 1 | UniProt (B7I7B6) Pfam (PF01386) | Acinetobacter baumannii (strain AB0057) | |
| 26 | Z (V) | 50S ribosomal protein L27 | polymer | 85 | 9072.4 | 1 | UniProt (B7I6V8) Pfam (PF01016) | Acinetobacter baumannii (strain AB0057) | |
| 27 | AA (W) | 50S ribosomal protein L28 | polymer | 78 | 9125.8 | 1 | UniProt (S3NQR5) Pfam (PF00830) | Acinetobacter rudis CIP 110305 | |
| 28 | BA (X) | 50S ribosomal protein L29 | polymer | 65 | 7449.7 | 1 | UniProt (B7IA31) Pfam (PF00831) | Acinetobacter baumannii (strain AB0057) | |
| 29 | CA (Y) | 50S ribosomal protein L30 | polymer | 58 | 6654.8 | 1 | UniProt (N8V730) Pfam (PF00327) | Acinetobacter sp. CIP 102082 | |
| 30 | DA (Z) | 50S ribosomal protein L32 | polymer | 61 | 7096.9 | 1 | UniProt (B7I7A4) Pfam (PF01783) | Acinetobacter baumannii (strain AB0057) | |
| 31 | EA (sN1) | 16s Ribosomal RNA | polymer | 1544 | 500297.5 | 1 | Acinetobacter baumannii AB0057 | ||
| 32 | FA (b) | 30S ribosomal protein S2 | polymer | 250 | 27680.4 | 1 | UniProt (V5VBC2) Pfam (PF00318) | Acinetobacter baumannii | |
| 33 | GA (c) | 30S ribosomal protein S3 | polymer | 250 | 27972.5 | 1 | UniProt (V5V9N0) Pfam (PF07650) Pfam (PF00189) | Acinetobacter baumannii | |
| 34 | HA (d) | 30S ribosomal protein S4 | polymer | 208 | 23311.8 | 1 | UniProt (B7IA15) Pfam (PF00163) Pfam (PF01479) | Acinetobacter baumannii (strain AB0057) | |
| 35 | IA (e) | 30S ribosomal protein S5 | polymer | 165 | 17181.8 | 1 | UniProt (B7IA22) Pfam (PF00333) Pfam (PF03719) | Acinetobacter baumannii (strain AB0057) | |
| 36 | JA (f) | 30S ribosomal protein S6 | polymer | 127 | 14987.0 | 1 | UniProt (B7IBC1) Pfam (PF01250) | Acinetobacter baumannii (strain AB0057) | |
| 37 | KA (g) | 30S ribosomal protein S7 | polymer | 156 | 17733.7 | 1 | UniProt (B7I7S0) Pfam (PF00177) | Acinetobacter baumannii (strain AB0057) | |
| 38 | LA (h) | 30S ribosomal protein S8 | polymer | 131 | 14250.7 | 1 | UniProt (B7IA25) Pfam (PF00410) | Acinetobacter baumannii (strain AB0057) | |
| 39 | MA (i) | 30S ribosomal protein S9 | polymer | 128 | 14287.6 | 1 | UniProt (V5VBA5) Pfam (PF00380) | Acinetobacter baumannii | |
| 40 | NA (j) | 30S ribosomal protein S10 | polymer | 103 | 11718.5 | 1 | UniProt (A0A1T1GZ10) | Acinetobacter sp. ANC 5600 | |
| 41 | OA (k) | 30S ribosomal protein S11 | polymer | 128 | 13558.5 | 1 | UniProt (A0A062C259) Pfam (PF00411) | Acinetobacter sp. 263903-1 | |
| 42 | PA (l) | 30S ribosomal protein S12 | polymer | 124 | 13797.1 | 1 | UniProt (B7I7R9) Pfam (PF00164) | Acinetobacter baumannii (strain AB0057) | |
| 43 | QA (m) | 30S ribosomal protein S13 | polymer | 118 | 13295.6 | 1 | UniProt (B7IA17) Pfam (PF00416) | Acinetobacter baumannii (strain AB0057) | |
| 44 | RA (n) | 30S ribosomal protein S14 | polymer | 101 | 11438.4 | 1 | UniProt (B7IA26) Pfam (PF00253) | Acinetobacter baumannii (strain AB0057) | |
| 45 | SA (o) | 30S ribosomal protein S15 | polymer | 89 | 10145.6 | 1 | UniProt (B7I3U0) Pfam (PF00312) | Acinetobacter baumannii (strain AB0057) | |
| 46 | TA (p) | 30S ribosomal protein S16 | polymer | 101 | 11223.1 | 1 | UniProt (A0A1V3DIZ9) Pfam (PF00886) | Acinetobacter baumannii | |
| 47 | UA (q) | 30S ribosomal protein S17 | polymer | 85 | 9543.1 | 1 | UniProt (B7IA30) Pfam (PF00366) | Acinetobacter baumannii (strain AB0057) | |
| 48 | VA (r) | 30S ribosomal protein S18 | polymer | 75 | 9009.5 | 1 | UniProt (A0A150HZL5) Pfam (PF01084) | Acinetobacter venetianus | |
| 49 | WA (s) | 30S ribosomal protein S19 | polymer | 91 | 10207.0 | 1 | UniProt (B7IA35) Pfam (PF00203) | Acinetobacter baumannii (strain AB0057) | |
| 50 | XA (t) | 30S ribosomal protein S20 | polymer | 88 | 9723.4 | 1 | UniProt (B7I5N9) Pfam (PF01649) | Acinetobacter baumannii (strain AB0057) | |
| 51 | YA (u) | 30S ribosomal protein S21 | polymer | 71 | 8474.0 | 1 | UniProt (A0A062C3F9) Pfam (PF01165) | Acinetobacter sp. 263903-1 | |
| 52 | ZA (3) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 53 | AB, AC, AE, BB, BC... (AN1, sN1) | MAGNESIUM ION | non-polymer | 24.3 | 93 | Chemie (MG) | |||
| 54 | AD (AN1) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 55 | AF, BF, CF, DF, EF... (R, V, Y, Z, sN1...) | water | water | 18.0 | 398 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2135082.6 | |
| Non-Polymers* | Number of molecules | 95 |
| Total formula weight | 2348.8 | |
| All* | Total formula weight | 2137431.3 |
