6UII
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with 5-[(3-aminopropyl)amino]pentane-1-thiol
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Polyamine deacetylase HDAC10 | polymer | 676 | 75025.6 | 1 | UniProt (F1QCV2) Pfam (PF00850) In PDB | Danio rerio (Zebrafish) | Histone deacetylase 10 |
| 2 | A | 5-[(3-aminopropyl)amino]pentane-1-thiol | non-polymer | 176.3 | 1 | Chemie (SS9) | |||
| 3 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 4 | A | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 5 | A | PHOSPHATE ION | non-polymer | 95.0 | 3 | Chemie (PO4) | |||
| 6 | water | water | 18.0 | 25 | Chemie (HOH) |
Sequence modifications
A: 2 - 675 (UniProt: F1QCV2)
| PDB | External Database | Details |
|---|---|---|
| Ala 1 | - | expression tag |
| Phe 154 | Ile 154 | conflict |
| Phe 307 | Tyr 307 | conflict |
| Thr 548 | Ser 548 | conflict |
| Glu 586 | Gly 586 | conflict |
| Arg 593 | Gly 593 | conflict |
| Arg 596 | Thr 596 | conflict |
| Met 613 | Thr 613 | conflict |
| Pro 646 | Leu 646 | conflict |
| Trp 676 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 75025.6 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 604.8 | |
| All* | Total formula weight | 75630.4 |
