6U59
HIV-1 B41 SOSIP.664 in complex with rabbit antibody 13B
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, I (A, C, G) | SOSIP.664 gp120,SOSIP.664 gp120 | polymer | 524 | 58872.9 | 3 | UniProt (B3UES2) Pfam (PF00516) | Human immunodeficiency virus 1 (HIV-1) | |
| 2 | B, F, J (B, D, I) | SOSIP.664 gp41 | polymer | 153 | 17357.8 | 3 | UniProt (B3UEZ6) Pfam (PF00517) | Human immunodeficiency virus 1 (HIV-1) | |
| 3 | C, G, K (L, E, J) | rabbit antibody 13B Fragment antigen binding light chain | polymer | 112 | 11977.2 | 3 | Oryctolagus cuniculus (Rabbit) | ||
| 4 | D, H, L (H, F, K) | rabbit antibody 13B Fragment antigen binding heavy chain | polymer | 119 | 12790.2 | 3 | Oryctolagus cuniculus (Rabbit) | ||
| 5 | AA, BA, CA, DA, FA... (a, b, c, d, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 33 | In PDB GlyTouCan (G42666HT) | |||
| 6 | EA, R, RA (e, R, r) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 7 | JA, W, WA (j, W, w) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 8 | AB, AC, BB, BC, CB... (A, I, B, C, D...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 30 | Chemie (NAG) |
Sequence modifications
A, C, G: -4 - 30 (PDB: 6U59)
A, C, G: 31 - 513 (UniProt: B3UES2)
B, D, I: 512 - 664 (UniProt: B3UEZ6)
A, C, G: 31 - 513 (UniProt: B3UES2)
| PDB | External Database | Details |
|---|---|---|
| Cys 501 | Ala 505 | engineered mutation |
| Arg 509 | Glu 513 | engineered mutation |
| Arg 510 | Lys 514 | engineered mutation |
| Arg 512 | Ala 516 | engineered mutation |
| Arg 513 | Val 517 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Pro 559 | Ile 563 | engineered mutation |
| Cys 605 | Thr 609 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 302994.4 | |
| Branched | Number of molecules | 39 |
| Total formula weight | 18010.9 | |
| Non-Polymers* | Number of molecules | 30 |
| Total formula weight | 6636.2 | |
| All* | Total formula weight | 327641.5 |
