6U0O
Crystal structure of a peptidoglycan release complex, SagB-SpdC, in lipidic cubic phase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Lysostaphin resistance protein A | polymer | 278 | 31024.7 | 1 | UniProt (Q2YYX7) Pfam (PF02517) | Staphylococcus aureus (strain bovine RF122 / ET3-1) | |
| 2 | B (B) | LYZ2 domain-containing protein | polymer | 297 | 34086.8 | 1 | UniProt (Q2FXF4) Pfam (PF01832) | Staphylococcus aureus (strain NCTC 8325) | |
| 3 | C (D) | FLAG peptide | polymer | 8 | 1015.0 | 1 | Synthetic construct | ||
| 4 | D (A) | CITRATE ANION | non-polymer | 189.1 | 1 | Chemie (FLC) | |||
| 5 | E (A) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
| 6 | F (A) | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 1 | Chemie (OLC) | |||
| 7 | G, H, I (A, B) | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 8 | J, K (B) | 2-(2-ETHOXYETHOXY)ETHANOL | non-polymer | 134.2 | 2 | Chemie (AE3) | |||
| 9 | L, M (A, B) | water | water | 18.0 | 80 | Chemie (HOH) |
Sequence modifications
A: 1 - 256 (UniProt: Q2YYX7)
B: 1 - 284 (UniProt: Q2FXF4)
| PDB | External Database | Details |
|---|---|---|
| Asp -21 | - | expression tag |
| Tyr -20 | - | expression tag |
| Lys -19 | - | expression tag |
| Asp -18 | - | expression tag |
| Asp -17 | - | expression tag |
| Asp -16 | - | expression tag |
| Asp -15 | - | expression tag |
| Leu -14 | - | expression tag |
| Glu -13 | - | expression tag |
| Val -12 | - | expression tag |
| Leu -11 | - | expression tag |
| Phe -10 | - | expression tag |
| Gln -9 | - | expression tag |
| Gly -8 | - | expression tag |
| Pro -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Ser -4 | - | expression tag |
| Ser -3 | - | expression tag |
| Thr -2 | - | expression tag |
| Glu -1 | - | expression tag |
| Tyr 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Lys 285 | - | expression tag |
| Leu 286 | - | expression tag |
| Ala 287 | - | expression tag |
| Ala 288 | - | expression tag |
| Ala 289 | - | expression tag |
| Leu 290 | - | expression tag |
| Glu 291 | - | expression tag |
| His 292 | - | expression tag |
| His 293 | - | expression tag |
| His 294 | - | expression tag |
| His 295 | - | expression tag |
| His 296 | - | expression tag |
| His 297 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 66126.5 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1296.4 | |
| All* | Total formula weight | 67422.9 |
