6TTS
Crystal structure of the GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | GGDEF diguanylate cyclase DgcB | polymer | 199 | 21449.9 | 2 | UniProt (A0A0H3CAN8) Pfam (PF00990) | Caulobacter vibrioides (strain NA1000 / CB15N) | |
| 2 | C, G, H, I, M (A, B) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 5 | Chemie (C2E) PubChem (135440063) PubChem (135566344) PubChem (136437725) PubChem (136465801) PubChem (136503951) PubChem (146177770) PubChem (173716374) PubChem (174009991) PubChem (135566464) PubChem (135625254) PubChem (135867623) PubChem (135975628) PubChem (136177399) PubChem (136443483) PubChem (137221491) PubChem (137295286) PubChem (148921766) PubChem (148921769) PubChem (164708340) PubChem (168270823) | |||
| 3 | D, E, F, J, K... (A, B) | SULFATE ION | non-polymer | 96.1 | 6 | Chemie (SO4) | |||
| 4 | N, O (A, B) | water | water | 18.0 | 16 | Chemie (HOH) |
Sequence modifications
A, B: 176 - 353 (UniProt: A0A0H3CAN8)
| PDB | External Database | Details |
|---|---|---|
| Met 155 | - | initiating methionine |
| Gly 156 | - | expression tag |
| Ser 157 | - | expression tag |
| Ser 158 | - | expression tag |
| His 159 | - | expression tag |
| His 160 | - | expression tag |
| His 161 | - | expression tag |
| His 162 | - | expression tag |
| His 163 | - | expression tag |
| His 164 | - | expression tag |
| Ser 165 | - | expression tag |
| Ser 166 | - | expression tag |
| Gly 167 | - | expression tag |
| Leu 168 | - | expression tag |
| Val 169 | - | expression tag |
| Pro 170 | - | expression tag |
| Arg 171 | - | expression tag |
| Gly 172 | - | expression tag |
| Ser 173 | - | expression tag |
| His 174 | - | expression tag |
| Met 175 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 42899.8 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 4028.4 | |
| All* | Total formula weight | 46928.2 |
