6TTR
Crystal Structure of the coiled coil and GGDEF domain of DgcB from Caulobacter crescentus in complex with c-di-GMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | GGDEF diguanylate cyclase DgcB | polymer | 222 | 24000.7 | 2 | UniProt (A0A0H3CAN8) Pfam (PF00990) | Caulobacter vibrioides (strain NA1000 / CB15N) | |
| 2 | C, G (A, B) | PHOSPHATE ION | non-polymer | 95.0 | 2 | Chemie (PO4) PubChem (1061) | |||
| 3 | D, E, F (A, B) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 3 | Chemie (C2E) PubChem (135440063) PubChem (135566344) PubChem (136437725) PubChem (136465801) PubChem (136503951) PubChem (146177770) PubChem (135566464) PubChem (135625254) PubChem (135867623) PubChem (135975628) PubChem (136177399) PubChem (136443483) PubChem (137221491) PubChem (137295286) PubChem (148921766) PubChem (148921769) PubChem (173716374) PubChem (174009991) PubChem (164708340) PubChem (168270823) |
Sequence modifications
A, B: 153 - 353 (UniProt: A0A0H3CAN8)
| PDB | External Database | Details |
|---|---|---|
| Met 132 | - | initiating methionine |
| Gly 133 | - | expression tag |
| Ser 134 | - | expression tag |
| Ser 135 | - | expression tag |
| His 136 | - | expression tag |
| His 137 | - | expression tag |
| His 138 | - | expression tag |
| His 139 | - | expression tag |
| His 140 | - | expression tag |
| His 141 | - | expression tag |
| Ser 142 | - | expression tag |
| Ser 143 | - | expression tag |
| Gly 144 | - | expression tag |
| Leu 145 | - | expression tag |
| Val 146 | - | expression tag |
| Pro 147 | - | expression tag |
| Arg 148 | - | expression tag |
| Gly 149 | - | expression tag |
| Ser 150 | - | expression tag |
| His 151 | - | expression tag |
| Met 152 | - | expression tag |
| Ala 261 | Glu 261 | engineered mutation |
| Ala 262 | Glu 262 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 48001.5 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 2261.2 | |
| All* | Total formula weight | 50262.6 |
