6TR4
Ruminococcus gnavus GH29 fucosidase E1_10125 D221A mutant in complex with fucose
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | F5/8 type C domain-containing protein | polymer | 552 | 61665.0 | 2 | UniProt (A0A2N5PIE7) Pfam (PF01120) Pfam (PF00754) UniProt (by SIFTS) (A0A6N3BKT0) | [Ruminococcus] gnavus E1 | |
| 2 | C (A) | beta-L-fucopyranose | non-polymer | 164.2 | 1 | Chemie (FUL) | |||
| 3 | D, M (A, B) | alpha-L-fucopyranose | non-polymer | 164.2 | 2 | Chemie (FUC) | |||
| 4 | E, F, G, N, O (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 5 | H, I, J, P, Q... (A, B) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 6 | K, L, S, T (A, B) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
| 7 | U, V (A, B) | water | water | 18.0 | 1507 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 552 (UniProt: A0A2N5PIE7)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | Arg 39 | conflict |
| Pro 2 | Ala 40 | conflict |
| Met 3 | Ala 41 | conflict |
| Asn 121 | Asp 159 | conflict |
| Ala 205 | Asp 243 | engineered mutation |
| Glu 377 | Ala 415 | conflict |
| Ile 500 | Val 538 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 123329.9 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 996.3 | |
| All* | Total formula weight | 124326.2 |
