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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6TNU

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1218S rRNApolymer1798579126.61GenBank (1329886537)Saccharomyces cerevisiae
2lmRNApolymer61923.21Saccharomyces cerevisiae
3P40S ribosomal protein S0-Apolymer20622811.11UniProt (B3LI22)
UniProt (by SIFTS) (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiaeNucleic acid-binding protein NAB1A
4Q40S ribosomal protein S1-Apolymer23226314.71UniProt (B3RHV0)
UniProt (by SIFTS) (P33442)
Pfam (PF01015)
In PDB		Saccharomyces cerevisiae
5E40S ribosomal protein S15polymer11713265.61UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiaeRIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
6R40S ribosomal protein S2polymer21623084.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiaeOmnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
7A40S ribosomal protein S3polymer22224631.71UniProt (P05750)
Pfam (PF00189)
Pfam (PF07650)
In PDB		Saccharomyces cerevisiaeRP13,Small ribosomal subunit protein uS3,YS3
8S40S ribosomal protein S4-Apolymer25829167.91UniProt (P0CX35)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Pfam (PF08071)
In PDB		Saccharomyces cerevisiaeRP5,S7,Small ribosomal subunit protein eS4-A,YS6
9BRps5ppolymer20622908.31UniProt (A0A1L4AA68)
UniProt (by SIFTS) (P26783)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiae
10T40S ribosomal protein S6-Apolymer22826181.41UniProt (P0CX37)
Pfam (PF01092)
In PDB		Saccharomyces cerevisiaeRP9,S10,Small ribosomal subunit protein eS6-A,YS4
11U40S ribosomal protein S7-Apolymer18421000.51UniProt (P26786)
Pfam (PF01251)
In PDB		Saccharomyces cerevisiaeRP30,RP40,Small ribosomal subunit protein eS7-A
12V40S ribosomal protein S8polymer18721018.01UniProt (A0A0J9X221)
Pfam (PF01201)
UniProt (by SIFTS) (P0CX39)
In PDB		Saccharomyces cerevisiae
13W40S ribosomal protein S9-Apolymer18421081.51UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiaeRP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
14C40S ribosomal protein S10-Apolymer9211042.61UniProt (Q08745)
Pfam (PF03501)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS10-A
15X40S ribosomal protein S11-Apolymer14216272.11UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Saccharomyces cerevisiaeRP41,S18,Small ribosomal subunit protein uS17-A,YS12
16D40S ribosomal protein S12polymer12113028.01UniProt (P48589)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS12
17Y40S ribosomal protein S13polymer15016928.71UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiaeS27a,Small ribosomal subunit protein uS15,YS15
18Z40S ribosomal protein S14-Bpolymer12713446.41UniProt (P39516)
Pfam (PF00411)
UniProt (by SIFTS) (P06367)
In PDB		Saccharomyces cerevisiaeRP59B,Small ribosomal subunit protein uS11-B
19F40S ribosomal protein S16-Apolymer14115659.21UniProt (P0CX51)
Pfam (PF00380)
In PDB		Saccharomyces cerevisiaeRP61R,Small ribosomal subunit protein uS9-A
20G40S ribosomal protein S17-Bpolymer12514268.51UniProt (P14127)
UniProt (by SIFTS) (P02407)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiaeRP51B,Small ribosomal subunit protein eS17-B
21H40S ribosomal protein S18-Apolymer14516940.41UniProt (P0CX55)
Pfam (PF00416)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS13-A
22I40S ribosomal protein S19-Apolymer14315810.91UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiaeRP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
23J40S ribosomal protein S20polymer10011363.31UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein uS10
24nP-site tRNApolymer7524482.81Saccharomyces cerevisiae
25a40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB		Saccharomyces cerevisiaeS26,Small ribosomal subunit protein eS21-A,YS25
26b40S ribosomal protein S22-Apolymer12914518.91UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiaeRP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
27c40S ribosomal protein S23-Apolymer14415942.71UniProt (P0CX29)
Pfam (PF00164)
In PDB		Saccharomyces cerevisiaeRP37,S28,Small ribosomal subunit protein uS12-A,YS14
28d40S ribosomal protein S24-Apolymer13415231.61UniProt (P0CX31)
Pfam (PF01282)
In PDB		Saccharomyces cerevisiaeRP50,Small ribosomal subunit protein eS24-A
29K40S ribosomal protein S25-Apolymer829540.31UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiaeRP45,S31,Small ribosomal subunit protein eS25-A,YS23
30e40S ribosomal protein S26-Bpolymer9711023.01UniProt (P39939)
Pfam (PF01283)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS26-B
31f40S ribosomal protein S27-Apolymer818762.21UniProt (P35997)
Pfam (PF01667)
In PDB		Saccharomyces cerevisiaeRP61,Small ribosomal subunit protein eS27-A,YS20
32M40S ribosomal protein S29-Apolymer536335.31UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiaeS36,Small ribosomal subunit protein uS14-A,YS29
33g40S ribosomal protein S30-Apolymer606779.11UniProt (P0CX33)
Pfam (PF04758)
In PDB		Saccharomyces cerevisiaeSmall ribosomal subunit protein eS30-A
34NUbiquitin-40S ribosomal protein S31polymer738329.91UniProt (P05759)
Pfam (PF01599)
In PDB		Saccharomyces cerevisiae
35OGuanine nucleotide-binding protein subunit beta-like proteinpolymer31234151.51UniProt (P38011)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiaeReceptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
36L40S ribosomal protein S28-Apolymer637116.31UniProt (Q3E7X9)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiaeS33,Small ribosomal subunit protein eS28-A,YS27
37mA-site tRNApolymer7624378.41GenBank (1751004028)Saccharomyces cerevisiae
38BQ25S rRNApolymer31841029020.61Saccharomyces cerevisiae
39BR5S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae
40BS5.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae
41AW60S ribosomal protein L2-Apolymer25127089.21UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiaeL5,Large ribosomal subunit protein uL2-A,RP8,YL6
42BA60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
43BE60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiaeL2,Large ribosomal subunit protein uL4-A,RP2,YL2
44BI60S ribosomal protein L5polymer29433415.41UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiaeL1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
45BM60S ribosomal protein L6-Bpolymer17519893.31UniProt (P05739)
UniProt (by SIFTS) (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiaeL17,Large ribosomal subunit protein eL6-B,RP18,YL16
46BO60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiaeL6,Large ribosomal subunit protein uL30-A,RP11,YL8
47AA60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeL4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
48AD60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiaeL8,Large ribosomal subunit protein uL6-A,RP24,YL11
49BD60S ribosomal protein L10polymer21825080.11UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiaeL9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
50AG60S ribosomal protein L11-Bpolymer16919266.11UniProt (Q3E757)
UniProt (by SIFTS) (P0C0W9)
Pfam (PF00673)
Pfam (PF00281)
In PDB		Saccharomyces cerevisiaeL16,Large ribosomal subunit protein uL5-B,RP39,YL22
51AJ60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL13-A
52AM60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL14-A
53AQ60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiaeL13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
54AU60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiaeL13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
55AX60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiaeL20A,Large ribosomal subunit protein uL22-A,YL17
56BB60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL18-A,RP28
57BF60S ribosomal protein L19-Apolymer18821631.11UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiaeL23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
58BH60S ribosomal protein L20-Apolymer17120347.71UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiaeL18a,Large ribosomal subunit protein eL20-A
59BJ60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL21-A
60BL60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiaeL1c,Large ribosomal subunit protein eL22-A,RP4,YL31
61AB60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiaeL17a,Large ribosomal subunit protein uL14-A,YL32
62AE60S ribosomal protein L24-Apolymer12614645.31UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiaeL30,Large ribosomal subunit protein eL24-A,RP29,YL21
63AH60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL23,RP16L,YL25,YP42'
64AK60S ribosomal protein L26-Apolymer12514005.51UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiaeL33,Large ribosomal subunit protein uL24-A,YL33
65AN60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL27-A
66AR60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiaeL27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
67AV60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL29,YL43
68AY60S ribosomal protein L30polymer9610487.31UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiaeL32,Large ribosomal subunit protein eL30,RP73,YL38
69BC60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiaeL34,Large ribosomal subunit protein eL31-A,YL28
70BG60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL32
71BK60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiaeL37,Large ribosomal subunit protein eL33-A,RP47,YL37
72BN60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL34-A
73BP60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein uL29-A
74AC60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiaeL39,Large ribosomal subunit protein eL36-A,YL39
75AF60S ribosomal protein L37-Apolymer819229.61UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiaeL43,Large ribosomal subunit protein eL37-A,YL35,YP55
76AI60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiaeLarge ribosomal subunit protein eL38
77AL60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiaeL46,Large ribosomal subunit protein eL39,YL40
78AOUbiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae
79AS60S ribosomal protein L41-Apolymer253354.21UniProt (by SIFTS) (P0CX86)
Pfam (PF05162)
In PDB		Saccharomyces cerevisiae
80AP60S ribosomal protein L42-Apolymer10311840.21UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiaeL41,Large ribosomal subunit protein eL42-A,YL27,YP44
81AT60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiaeL37a,Large ribosomal subunit protein eL43-A,YL35
82eIEukaryotic translation initiation factor 5A-1polymer15416889.01UniProt (P23301)
Pfam (PF21485)
Pfam (PF01287)
In PDB		Saccharomyces cerevisiaeeIF-5A-1,Hypusine-containing protein HP2,eIF-4D
83BT60S ribosomal protein L1polymer21014944.31Saccharomyces cerevisiae
84M, N, BN, AF, AO...ZINC IONnon-polymer65.47Chemie (ZN)
85BQSPERMIDINEnon-polymer145.21Chemie (SPD)
86BQ4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dionenon-polymer281.31Chemie (3HE)
Sequence modifications
N: 80 - 152 (UniProt: P05759)
PDBExternal DatabaseDetails
Ala 97Lys 97conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains83
Total formula weight3037730.2
Non-Polymers*Number of molecules9
Total formula weight884.5
All*Total formula weight3038614.6
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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