6TNU
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S rRNA | polymer | 1798 | 579126.6 | 1 | GenBank (1329886537) | Saccharomyces cerevisiae | |
| 2 | B (l) | mRNA | polymer | 6 | 1923.2 | 1 | Saccharomyces cerevisiae | ||
| 3 | C (P) | 40S ribosomal protein S0-A | polymer | 206 | 22811.1 | 1 | UniProt (B3LI22) Pfam (PF00318) UniProt (by SIFTS) (P32905) | Saccharomyces cerevisiae | Nucleic acid-binding protein NAB1A |
| 4 | D (Q) | 40S ribosomal protein S1-A | polymer | 232 | 26314.7 | 1 | UniProt (B3RHV0) Pfam (PF01015) UniProt (by SIFTS) (P33442) | Saccharomyces cerevisiae | |
| 5 | E (E) | 40S ribosomal protein S15 | polymer | 117 | 13265.6 | 1 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae | RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21 |
| 6 | F (R) | 40S ribosomal protein S2 | polymer | 216 | 23084.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae | Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5 |
| 7 | G (A) | 40S ribosomal protein S3 | polymer | 222 | 24631.7 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae | RP13,Small ribosomal subunit protein uS3,YS3 |
| 8 | H (S) | 40S ribosomal protein S4-A | polymer | 258 | 29167.9 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Saccharomyces cerevisiae | RP5,S7,Small ribosomal subunit protein eS4-A,YS6 |
| 9 | I (B) | Rps5p | polymer | 206 | 22908.3 | 1 | UniProt (A0A1L4AA68) Pfam (PF00177) UniProt (by SIFTS) (P26783) | Saccharomyces cerevisiae | |
| 10 | J (T) | 40S ribosomal protein S6-A | polymer | 228 | 26181.4 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae | RP9,S10,Small ribosomal subunit protein eS6-A,YS4 |
| 11 | K (U) | 40S ribosomal protein S7-A | polymer | 184 | 21000.5 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 12 | L (V) | 40S ribosomal protein S8 | polymer | 187 | 21018.0 | 1 | UniProt (A0A0J9X221) Pfam (PF01201) UniProt (by SIFTS) (P0CX39) | Saccharomyces cerevisiae | |
| 13 | M (W) | 40S ribosomal protein S9-A | polymer | 184 | 21081.5 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae | RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11 |
| 14 | N (C) | 40S ribosomal protein S10-A | polymer | 92 | 11042.6 | 1 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae | Small ribosomal subunit protein eS10-A |
| 15 | O (X) | 40S ribosomal protein S11-A | polymer | 142 | 16272.1 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae | RP41,S18,Small ribosomal subunit protein uS17-A,YS12 |
| 16 | P (D) | 40S ribosomal protein S12 | polymer | 121 | 13028.0 | 1 | UniProt (P48589) Pfam (PF01248) | Saccharomyces cerevisiae | Small ribosomal subunit protein eS12 |
| 17 | Q (Y) | 40S ribosomal protein S13 | polymer | 150 | 16928.7 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae | S27a,Small ribosomal subunit protein uS15,YS15 |
| 18 | R (Z) | 40S ribosomal protein S14-B | polymer | 127 | 13446.4 | 1 | UniProt (P39516) Pfam (PF00411) UniProt (by SIFTS) (P06367) | Saccharomyces cerevisiae | RP59B,Small ribosomal subunit protein uS11-B |
| 19 | S (F) | 40S ribosomal protein S16-A | polymer | 141 | 15659.2 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae | RP61R,Small ribosomal subunit protein uS9-A |
| 20 | T (G) | 40S ribosomal protein S17-B | polymer | 125 | 14268.5 | 1 | UniProt (P14127) Pfam (PF00833) UniProt (by SIFTS) (P02407) | Saccharomyces cerevisiae | RP51B,Small ribosomal subunit protein eS17-B |
| 21 | U (H) | 40S ribosomal protein S18-A | polymer | 145 | 16940.4 | 1 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae | Small ribosomal subunit protein uS13-A |
| 22 | V (I) | 40S ribosomal protein S19-A | polymer | 143 | 15810.9 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae | RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A |
| 23 | W (J) | 40S ribosomal protein S20 | polymer | 100 | 11363.3 | 1 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae | Small ribosomal subunit protein uS10 |
| 24 | X (n) | P-site tRNA | polymer | 75 | 24482.8 | 1 | Saccharomyces cerevisiae | ||
| 25 | Y (a) | 40S ribosomal protein S21-A | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae | S26,Small ribosomal subunit protein eS21-A,YS25 |
| 26 | Z (b) | 40S ribosomal protein S22-A | polymer | 129 | 14518.9 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae | RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22 |
| 27 | AA (c) | 40S ribosomal protein S23-A | polymer | 144 | 15942.7 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 28 | BA (d) | 40S ribosomal protein S24-A | polymer | 134 | 15231.6 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae | RP50,Small ribosomal subunit protein eS24-A |
| 29 | CA (K) | 40S ribosomal protein S25-A | polymer | 82 | 9540.3 | 1 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae | RP45,S31,Small ribosomal subunit protein eS25-A,YS23 |
| 30 | DA (e) | 40S ribosomal protein S26-B | polymer | 97 | 11023.0 | 1 | UniProt (P39939) Pfam (PF01283) | Saccharomyces cerevisiae | Small ribosomal subunit protein eS26-B |
| 31 | EA (f) | 40S ribosomal protein S27-A | polymer | 81 | 8762.2 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae | RP61,Small ribosomal subunit protein eS27-A,YS20 |
| 32 | FA (M) | 40S ribosomal protein S29-A | polymer | 53 | 6335.3 | 1 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae | S36,Small ribosomal subunit protein uS14-A,YS29 |
| 33 | GA (g) | 40S ribosomal protein S30-A | polymer | 60 | 6779.1 | 1 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae | Small ribosomal subunit protein eS30-A |
| 34 | HA (N) | Ubiquitin-40S ribosomal protein S31 | polymer | 73 | 8329.9 | 1 | UniProt (P05759) Pfam (PF01599) | Saccharomyces cerevisiae | |
| 35 | IA (O) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 312 | 34151.5 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae | Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1 |
| 36 | JA (L) | 40S ribosomal protein S28-A | polymer | 63 | 7116.3 | 1 | UniProt (Q3E7X9) Pfam (PF01200) | Saccharomyces cerevisiae | S33,Small ribosomal subunit protein eS28-A,YS27 |
| 37 | KA (m) | A-site tRNA | polymer | 76 | 24378.4 | 1 | GenBank (1751004028) | Saccharomyces cerevisiae | |
| 38 | LA (BQ) | 25S rRNA | polymer | 3184 | 1029020.6 | 1 | Saccharomyces cerevisiae | ||
| 39 | MA (BR) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (1329886537) | Saccharomyces cerevisiae | |
| 40 | NA (BS) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1331532632) | Saccharomyces cerevisiae | |
| 41 | OA (AW) | 60S ribosomal protein L2-A | polymer | 251 | 27089.2 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 42 | PA (BA) | 60S ribosomal protein L3 | polymer | 386 | 43719.6 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 43 | QA (BE) | 60S ribosomal protein L4-A | polymer | 361 | 39027.9 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 44 | RA (BI) | 60S ribosomal protein L5 | polymer | 294 | 33415.4 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 45 | SA (BM) | 60S ribosomal protein L6-B | polymer | 175 | 19893.3 | 1 | UniProt (P05739) Pfam (PF01159) UniProt (by SIFTS) (Q02326) | Saccharomyces cerevisiae | L17,Large ribosomal subunit protein eL6-B,RP18,YL16 |
| 46 | TA (BO) | 60S ribosomal protein L7-A | polymer | 222 | 25240.4 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 47 | UA (AA) | 60S ribosomal protein L8-A | polymer | 233 | 25815.0 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 48 | VA (AD) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 49 | WA (BD) | 60S ribosomal protein L10 | polymer | 218 | 25080.1 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae | L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 50 | XA (AG) | 60S ribosomal protein L11-B | polymer | 169 | 19266.1 | 1 | UniProt (Q3E757) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P0C0W9) | Saccharomyces cerevisiae | L16,Large ribosomal subunit protein uL5-B,RP39,YL22 |
| 51 | YA (AJ) | 60S ribosomal protein L13-A | polymer | 193 | 21885.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL13-A |
| 52 | ZA (AM) | 60S ribosomal protein L14-A | polymer | 136 | 14976.8 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL14-A |
| 53 | AB (AQ) | 60S ribosomal protein L15-A | polymer | 203 | 24351.2 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 54 | BB (AU) | 60S ribosomal protein L16-A | polymer | 197 | 22029.0 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 55 | CB (AX) | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 56 | DB (BB) | 60S ribosomal protein L18-A | polymer | 185 | 20478.1 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL18-A,RP28 |
| 57 | EB (BF) | 60S ribosomal protein L19-A | polymer | 188 | 21631.1 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 58 | FB (BH) | 60S ribosomal protein L20-A | polymer | 171 | 20347.7 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae | L18a,Large ribosomal subunit protein eL20-A |
| 59 | GB (BJ) | 60S ribosomal protein L21-A | polymer | 159 | 18148.1 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL21-A |
| 60 | HB (BL) | 60S ribosomal protein L22-A | polymer | 100 | 11263.9 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 61 | IB (AB) | 60S ribosomal protein L23-A | polymer | 136 | 14362.8 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 62 | JB (AE) | 60S ribosomal protein L24-A | polymer | 126 | 14645.3 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae | L30,Large ribosomal subunit protein eL24-A,RP29,YL21 |
| 63 | KB (AH) | 60S ribosomal protein L25 | polymer | 121 | 13771.2 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 64 | LB (AK) | 60S ribosomal protein L26-A | polymer | 125 | 14005.5 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 65 | MB (AN) | 60S ribosomal protein L27-A | polymer | 135 | 15437.2 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL27-A |
| 66 | NB (AR) | 60S ribosomal protein L28 | polymer | 148 | 16630.5 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 67 | OB (AV) | 60S ribosomal protein L29 | polymer | 58 | 6560.7 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL29,YL43 |
| 68 | PB (AY) | 60S ribosomal protein L30 | polymer | 96 | 10487.3 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 69 | QB (BC) | 60S ribosomal protein L31-A | polymer | 109 | 12649.8 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 70 | RB (BG) | 60S ribosomal protein L32 | polymer | 127 | 14478.1 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL32 |
| 71 | SB (BK) | 60S ribosomal protein L33-A | polymer | 106 | 12045.9 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 72 | TB (BN) | 60S ribosomal protein L34-A | polymer | 112 | 12608.8 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL34-A |
| 73 | UB (BP) | 60S ribosomal protein L35-A | polymer | 119 | 13811.4 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae | Large ribosomal subunit protein uL29-A |
| 74 | VB (AC) | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 75 | WB (AF) | 60S ribosomal protein L37-A | polymer | 81 | 9229.6 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 76 | XB (AI) | 60S ribosomal protein L38 | polymer | 77 | 8714.4 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae | Large ribosomal subunit protein eL38 |
| 77 | YB (AL) | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae | L46,Large ribosomal subunit protein eL39,YL40 |
| 78 | ZB (AO) | Ubiquitin-60S ribosomal protein L40 | polymer | 52 | 6032.3 | 1 | UniProt (P0CH08) Pfam (PF01020) | Saccharomyces cerevisiae | |
| 79 | AC (AS) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 1 | Pfam (PF05162) UniProt (by SIFTS) (P0CX86) | Saccharomyces cerevisiae | |
| 80 | BC (AP) | 60S ribosomal protein L42-A | polymer | 103 | 11840.2 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 81 | CC (AT) | 60S ribosomal protein L43-A | polymer | 91 | 9981.8 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 82 | DC (eI) | Eukaryotic translation initiation factor 5A-1 | polymer | 154 | 16889.0 | 1 | UniProt (P23301) Pfam (PF21485) Pfam (PF01287) | Saccharomyces cerevisiae | eIF-5A-1,Hypusine-containing protein HP2,eIF-4D |
| 83 | EC (BT) | 60S ribosomal protein L1 | polymer | 210 | 14944.3 | 1 | Saccharomyces cerevisiae | ||
| 84 | FC, GC, JC, KC, LC... (M, N, BN, AF, AO...) | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 85 | HC (BQ) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 86 | IC (BQ) | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) |
Sequence modifications
N: 80 - 152 (UniProt: P05759)
| PDB | External Database | Details |
|---|---|---|
| Ala 97 | Lys 97 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 83 |
| Total formula weight | 3037730.2 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 884.5 | |
| All* | Total formula weight | 3038614.6 |
