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6TMK

Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, composite model

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, Y
(q, Q)		ATPTG11polymer13415425.42UniProt (A0A125YPS4)Toxoplasma gondii (strain ATCC 50853 / GT1)
2B, Z
(i, I)		ATPTG7polymer23626866.82UniProt (S7VXW3)Toxoplasma gondii (strain ATCC 50853 / GT1)
3AA, C
(t, T)		ATPTG14polymer13314424.52UniProt (A0A125YLH9)Toxoplasma gondii (strain ATCC 50853 / GT1)
4BA, D
(g, G)		ATPTG5polymer25228162.62UniProt (S7WD71)Toxoplasma gondii (strain ATCC 50853 / GT1)
5CA, E
(o, O)		subunit kpolymer15717963.52UniProt (A0A125YTD7)Toxoplasma gondii (strain ATCC 50853 / GT1)
6DA, F
(k, K)		subunit apolymer22424562.62UniProt (A0A125YSI9)Toxoplasma gondii (strain ATCC 50853 / GT1)
7EA, G
(j, J)		subunit i/jpolymer22926600.52UniProt (S7UQ82)Toxoplasma gondii (strain ATCC 50853 / GT1)
8FA, H
(s, S)		ATPTG13polymer12814923.22UniProt (A0A125YLN4)Toxoplasma gondii (strain ATCC 50853 / GT1)
9GA, I
(u, U)		ATPTG15polymer12613871.92UniProt (A0A125YRP0)Toxoplasma gondii (strain ATCC 50853 / GT1)
10HA, J
(h, H)		ATPTG6polymer23927477.52UniProt (A0A125YL08)Toxoplasma gondii (strain ATCC 50853 / GT1)
11IA, K
(e, E)		ATPTG3polymer32535159.22UniProt (A0A125YLR0)Toxoplasma gondii (strain ATCC 50853 / GT1)
12JA, L
(x, X)		ATPTG17polymer839486.72UniProt (S7W180)Toxoplasma gondii (strain ATCC 50853 / GT1)
13KA, M
(b, B)		subunit bpolymer57164811.62UniProt (S7V2T0)Toxoplasma gondii (strain ATCC 50853 / GT1)
14LA, N
(r, R)		ATPTG12polymer13415400.62UniProt (A0A125YKF7)Toxoplasma gondii (strain ATCC 50853 / GT1)
15MA, O
(p, P)		ATPTG10polymer13815165.22UniProt (A0A125YMA7)Toxoplasma gondii (strain ATCC 50853 / GT1)
16NA, P
(v, V)		subunit fpolymer11113030.02UniProt (S7UQT7)Toxoplasma gondii (strain ATCC 50853 / GT1)
17OA, Q
(l, L)		ATPTG8polymer20823365.92UniProt (S7W7F1)Toxoplasma gondii (strain ATCC 50853 / GT1)
18PA, R
(c, C)		ATPTG1polymer39846025.42UniProt (S7W9J5)Toxoplasma gondii (strain ATCC 50853 / GT1)
19QA, S
(d, D)		ATPTG2polymer31035238.52UniProt (A0A125YV76)Toxoplasma gondii (strain ATCC 50853 / GT1)
20RA, T
(m, M)		subunit 8polymer20522344.62UniProt (A0A125YPQ4)Toxoplasma gondii (strain ATCC 50853 / GT1)
21SA, U
(n, N)		ATPTG9polymer16618426.82UniProt (A0A125YUZ2)Toxoplasma gondii (strain ATCC 50853 / GT1)
22TA, V
(f, F)		ATPTG4polymer26728557.42UniProt (S7UVZ7)Toxoplasma gondii (strain ATCC 50853 / GT1)
23UA, W
(w, W)		ATPTG16polymer10611587.42UniProt (S7VTI0)Toxoplasma gondii (strain ATCC 50853 / GT1)
24VA, X
(a, A)		subunit dpolymer53661362.32UniProt (S7V493)Toxoplasma gondii (strain ATCC 50853 / GT1)
25RB, WA
(i2, i1)		Inhibitor of F1polymer14516167.52UniProt (A0A125YJP2)Toxoplasma gondii (strain ATCC 50853 / GT1)
26SB, TB, UB, XA, YA...
(A2, E2, C2, A1, E1...)		ATP synthase subunit alpha,subunit alphapolymer56561189.26UniProt (S7UU80)Toxoplasma gondii (strain ATCC 50853 / GT1)
27AB, BB, CB, VB, WB...
(B2, F2, D2, B1, F1...)		ATP synthase subunit betapolymer56059983.36UniProt (A0A125YYY4)Toxoplasma gondii (strain ATCC 50853 / GT1)
28DB, YB
(g2, g1)		ATP synthase subunit gammapolymer31434573.02UniProt (A0A125YUH0)Toxoplasma gondii (strain ATCC 50853 / GT1)
29EB, ZB
(d2, d1)		ATP synthase subunit deltapolymer18319476.12UniProt (A0A125YRE2)Toxoplasma gondii (strain ATCC 50853 / GT1)
30AC, FB
(e2, e1)		ATP synthase subunit epsilonpolymer738492.72UniProt (S7VV10)Toxoplasma gondii (strain ATCC 50853 / GT1)
31BC, GB
(G2, G1)		Oligomycin sensitivity conferring protein (OSCP)polymer25227670.02UniProt (A0A125YKF8)Toxoplasma gondii (strain ATCC 50853 / GT1)
32CC, DC, EC, FC, GC...
(H2, I2, J2, K2, L2...)		subunit cpolymer16617753.520UniProt (A0A125YJV2)Toxoplasma gondii (strain ATCC 50853 / GT1)
33ID, LD, MC, PC, VD...
(O, o, V, v)		1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEnon-polymer790.16Chemie (PC1)
PubChem (65146)
PubChem (94190)
PubChem (10417837)
34AE, BE, CD, DE, ED...
(C, D, c, d, O...)		DODECYL-BETA-D-MALTOSIDEnon-polymer510.614Chemie (LMT)
35AD, BD, CE, GD, KD...
(v, c, D, d, O...)		CARDIOLIPINnon-polymer1464.018Chemie (CDL)
PubChem (17753886)
PubChem (5287898)
36DD, MD, ND, QC, RC...
(c, J, j, C)		1,2-dioleoyl-sn-glycero-3-phosphoethanolaminenon-polymer744.06Chemie (PEE)
PubChem (108229)
PubChem (44891344)
PubChem (54095275)
PubChem (14238554)
PubChem (5909904)
PubChem (9546757)
PubChem (6437392)
PubChem (99655478)
PubChem (99655479)
PubChem (9546744)
PubChem (138113035)
PubChem (171729549)
37EE, FE, GE, JE, KE...
(A2, E2, C2, A1, E1...)		ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.26Chemie (ATP)
38HE, IE, ME, NE
(B2, D2, B1, D1)		ADENOSINE-5'-DIPHOSPHATEnon-polymer427.24Chemie (ADP)
Sequence modifications
g, G: 1 - 252 (UniProt: S7WD71)
PDBExternal DatabaseDetails
Val 51Phe 51conflict
Cys 73Ser 73conflict
Lys 110Glu 110conflict
Thr 233Met 233conflict
h, H: 1 - 239 (UniProt: A0A125YL08)
PDBExternal DatabaseDetails
Asn 89His 89conflict
e, E: 1 - 325 (UniProt: A0A125YLR0)
PDBExternal DatabaseDetails
-Lys 14deletion
Pro 63Ser 64conflict
Leu 99Pro 100conflict
Ala 312Thr 313conflict
x, X: 1 - 76 (UniProt: S7W180)
PDBExternal DatabaseDetails
Trp 77-expression tag
Met 78-expression tag
Phe 79-expression tag
Gly 80-expression tag
Asn 81-expression tag
Ser 82-expression tag
Tyr 83-expression tag
b, B: 1 - 571 (UniProt: S7V2T0)
PDBExternal DatabaseDetails
Leu 48Ser 48conflict
Thr 472Ala 472conflict
v, V: 1 - 111 (UniProt: S7UQT7)
PDBExternal DatabaseDetails
Ala 54Val 54conflict
n, N: 1 - 166 (UniProt: A0A125YUZ2)
PDBExternal DatabaseDetails
Ser 140Ala 140conflict
a, A: 1 - 536 (UniProt: S7V493)
PDBExternal DatabaseDetails
Thr 351Ala 484conflict
A2, E2, C2, A1, E1, C1: 1 - 538 (UniProt: S7UU80)
A2, E2, C2, A1, E1, C1: 539 - 565 (PDB: 6TMK)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains90
Total formula weight2515343.9
Non-Polymers*Number of molecules54
Total formula weight47458.3
All*Total formula weight2562802.2
*Water molecules are not included.

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PDB entries from 2026-05-06

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