6TCY
X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with a inhibitor SS555
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (AAA, BBB) | Histone deacetylase 6 | polymer | 359 | 39899.1 | 2 | UniProt (F8W4B7) Pfam (PF00850) | Danio rerio (Zebrafish) | |
| 2 | C, O (AAA, BBB) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 3 | D, E, P, Q (AAA, BBB) | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) | |||
| 4 | F, R (AAA, BBB) | 4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide | non-polymer | 386.4 | 2 | Chemie (N28) | |||
| 5 | G, H, I, J, K... (AAA, BBB) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 6 | L (AAA) | 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL | non-polymer | 164.2 | 1 | Chemie (TOE) | |||
| 7 | M (AAA) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 8 | N (AAA) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 9 | U (BBB) | 2-METHOXYETHANOL | non-polymer | 76.1 | 1 | Chemie (MXE) | |||
| 10 | V (BBB) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 1 | Chemie (DMS) | |||
| 11 | W, X (AAA, BBB) | water | water | 18.0 | 758 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 79798.3 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 1940.6 | |
| All* | Total formula weight | 81738.8 |
