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6TCV

Crystal structure of Bacteroides thetaiotamicron EndoBT-3987 in complex with Man9GlcNAc2Asn substrate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)
Endo-beta-N-acetylglucosaminidase F1polymer45149133.81UniProt (Q8A0N4)
Pfam (PF08522)
Bacteroides thetaiotaomicron VPI-5482
2B
(A)
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1883.71In PDB
GlyTouCan (G60230HH)
3C
(B)
ASPARAGINEnon-polymer132.11Chemie (ASN)
4D
(B)
GLYCEROLnon-polymer92.11Chemie (GOL)
5E
(B)
waterwater18.0268Chemie (HOH)
Sequence modifications
B: 27 - 476 (UniProt: Q8A0N4)
PDBExternal DatabaseDetails
Gly 26-expression tag
Ala 312Asp 312engineered mutation
Leu 314Glu 314engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight49133.8
BranchedNumber of molecules1
Total formula weight1883.7
Non-Polymers*Number of molecules2
Total formula weight224.2
All*Total formula weight51241.7
*Water molecules are not included.

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PDB entries from 2025-07-02

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