6TCV
Crystal structure of Bacteroides thetaiotamicron EndoBT-3987 in complex with Man9GlcNAc2Asn substrate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Endo-beta-N-acetylglucosaminidase F1 | polymer | 451 | 49133.8 | 1 | UniProt (Q8A0N4) Pfam (PF08522) | Bacteroides thetaiotaomicron VPI-5482 | |
| 2 | B (A) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1883.7 | 1 | In PDB GlyTouCan (G60230HH) | |||
| 3 | C (B) | ASPARAGINE | non-polymer | 132.1 | 1 | Chemie (ASN) | |||
| 4 | D (B) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 5 | E (B) | water | water | 18.0 | 268 | Chemie (HOH) |
Sequence modifications
B: 27 - 476 (UniProt: Q8A0N4)
| PDB | External Database | Details |
|---|---|---|
| Gly 26 | - | expression tag |
| Ala 312 | Asp 312 | engineered mutation |
| Leu 314 | Glu 314 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 49133.8 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1883.7 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 224.2 | |
| All* | Total formula weight | 51241.7 |
