6T9L
SAGA DUB module bound to a ubiqitinated nucleosome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E | Histone H3.2 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | |
| 2 | B, F | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (African clawed frog) | |
| 3 | C, G | Histone H2A | polymer | 129 | 13978.2 | 2 | UniProt (Q6AZJ8) Pfam (PF00125) Pfam (PF16211) UniProt (by SIFTS) (P06897) In PDB | Xenopus laevis (African clawed frog) | |
| 4 | D | Histone H2B 1.1 | polymer | 122 | 13524.8 | 1 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
| 5 | H | Histone H2B | polymer | 125 | 13848.1 | 1 | UniProt (F6R8G8) Pfam (PF00125) UniProt (by SIFTS) (P02281) In PDB | Xenopus laevis (Western clawed frog) | |
| 6 | I | Widom601 DNA (145-MER) | polymer | 145 | 44520.4 | 1 | synthetic construct | ||
| 7 | J | Widom601 DNA (145-MER) | polymer | 145 | 44991.7 | 1 | synthetic construct | ||
| 8 | K | Ubiquitin carboxyl-terminal hydrolase 8 | polymer | 471 | 53692.3 | 1 | UniProt (P50102) Pfam (PF02148) Pfam (PF00443) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Deubiquitinating enzyme 8,Ubiquitin thioesterase 8,Ubiquitin-specific-processing protease 8 |
| 9 | L | Transcription and mRNA export factor SUS1 | polymer | 96 | 11094.5 | 1 | UniProt (Q6WNK7) Pfam (PF10163) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
| 10 | M | SAGA-associated factor 11 | polymer | 99 | 11297.6 | 1 | UniProt (Q03067) Pfam (PF18519) Pfam (PF08209) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | 11 kDa SAGA-associated factor |
| 11 | N | SAGA-associated factor 73 | polymer | 657 | 72976.7 | 1 | UniProt (P53165) Pfam (PF18508) Pfam (PF08313) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | 73 kDa SAGA-associated factor,SAGA histone acetyltransferase complex 73 kDa subunit |
| 12 | O | Polyubiquitin-C | polymer | 76 | 8576.8 | 1 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (Human) | |
| 13 | K, M, N | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
D: 1 - 122 (UniProt: P02281)
| PDB | External Database | Details |
|---|---|---|
| Ala 102 | Gly 103 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 29 | Ser 33 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 355613.6 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 523.3 | |
| All* | Total formula weight | 356136.9 |
