6T90
OCT4-SOX2-bound nucleosome - SHL-6
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Histone H3.1 | polymer | 139 | 15719.4 | 1 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
2 | B, F | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (Human) | |
3 | C, G | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (Human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
4 | D, H | Histone H2B type 1-J | polymer | 128 | 14088.3 | 2 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H2B.1,Histone H2B.r,H2B/r |
5 | E | Histone H3.1 | polymer | 137 | 15491.2 | 1 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
6 | I | DNA (146-MER) | polymer | 153 | 46962.0 | 1 | synthetic construct | ||
7 | J | DNA (146-MER) | polymer | 147 | 45634.1 | 1 | synthetic construct | ||
8 | K | Green fluorescent protein,POU domain, class 5, transcription factor 1 | polymer | 643 | 70521.3 | 1 | UniProt (P42212) UniProt (Q01860) Pfam (PF01353) Pfam (PF00157) Pfam (PF00046) In PDB | Aequorea victoria (Jellyfish) | Octamer-binding protein 3,Oct-3,Octamer-binding protein 4,Oct-4,Octamer-binding transcription factor 3,OTF-3 |
9 | L | Transcription factor SOX-2 | polymer | 105 | 12718.7 | 1 | UniProt (P48431) Pfam (PF00505) In PDB | Homo sapiens (Human) | |
10 | A, C, D, E, G... | PENTANEDIAL | non-polymer | 100.1 | 9 | Chemie (PTD) |
Sequence modifications
A: 1 - 136 (UniProt: P68431)
B, F: 1 - 103 (UniProt: P62805)
C, G: 1 - 130 (UniProt: P04908)
D, H: 1 - 125 (UniProt: P06899)
E: 1 - 134 (UniProt: P68431)
K: -248 - -10 (UniProt: P42212)
K: 1 - 360 (UniProt: Q01860)
L: 37 - 118 (UniProt: P48431)
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -270 | - | initiating methionine |
Asp -269 | - | expression tag |
Trp -268 | - | expression tag |
Ser -267 | - | expression tag |
His -266 | - | expression tag |
Pro -265 | - | expression tag |
Gln -264 | - | expression tag |
Phe -263 | - | expression tag |
Glu -262 | - | expression tag |
Lys -261 | - | expression tag |
Ser -260 | - | expression tag |
Ala -259 | - | expression tag |
Val -258 | - | expression tag |
Asp -257 | - | expression tag |
Glu -256 | - | expression tag |
Asn -255 | - | expression tag |
Leu -254 | - | expression tag |
Tyr -253 | - | expression tag |
Phe -252 | - | expression tag |
Gln -251 | - | expression tag |
Gly -250 | - | expression tag |
Gly -249 | - | expression tag |
Val -247 | - | insertion |
Leu -184 | Phe 64 | conflict |
Thr -183 | Ser 65 | conflict |
Lys -42 | Ala 206 | conflict |
Leu -17 | His 231 | conflict |
Glu -9 | - | linker |
Ala -8 | - | linker |
Ala -7 | - | linker |
Ala -6 | - | linker |
Lys -5 | - | linker |
Glu -4 | - | linker |
Ala -3 | - | linker |
Ala -2 | - | linker |
Ala -1 | - | linker |
Lys 0 | - | linker |
PDB | External Database | Details |
---|---|---|
Leu 361 | - | expression tag |
Pro 362 | - | expression tag |
Glu 363 | - | expression tag |
Thr 364 | - | expression tag |
Gly 365 | - | expression tag |
Gly 366 | - | expression tag |
His 367 | - | expression tag |
His 368 | - | expression tag |
His 369 | - | expression tag |
His 370 | - | expression tag |
His 371 | - | expression tag |
His 372 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 14 | - | initiating methionine |
Asp 15 | - | expression tag |
Trp 16 | - | expression tag |
Ser 17 | - | expression tag |
His 18 | - | expression tag |
Pro 19 | - | expression tag |
Gln 20 | - | expression tag |
Phe 21 | - | expression tag |
Glu 22 | - | expression tag |
Lys 23 | - | expression tag |
Ser 24 | - | expression tag |
Ala 25 | - | expression tag |
Val 26 | - | expression tag |
Asp 27 | - | expression tag |
Glu 28 | - | expression tag |
Asn 29 | - | expression tag |
Leu 30 | - | expression tag |
Tyr 31 | - | expression tag |
Phe 32 | - | expression tag |
Gln 33 | - | expression tag |
Gly 34 | - | expression tag |
Gly 35 | - | expression tag |
Met 36 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 287472.4 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 901.0 | |
All* | Total formula weight | 288373.4 |