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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6T83

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
12b, a18S rRNApolymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae (Baker's yeast)
2Ab, b40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
3Ba, c40S ribosomal protein S1-Apolymer25528798.52UniProt (P33442)
Pfam (PF01015)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
4Pb, q40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
5Cb, d40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
6Db, e40S ribosomal protein S3polymer24026542.82UniProt (P05750)
Pfam (PF00189)
Pfam (PF07650)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP13,Small ribosomal subunit protein uS3,YS3
7Eb, f40S ribosomal protein S4-Apolymer26129469.32UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
8Fb, gRps5ppolymer22525072.62UniProt (A0A1L4AA68)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
9Gb, h40S ribosomal protein S6-Apolymer23627054.52UniProt (P0CX37)
Pfam (PF01092)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
10Hb, i40S ribosomal protein S7-Apolymer19021658.22UniProt (P26786)
Pfam (PF01251)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
11Ib, j40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
12Jb, k40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
13Kb, l40S ribosomal protein S10-Apolymer10512757.42UniProt (Q08745)
Pfam (PF03501)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS10-A
14Lb, m40S ribosomal protein S11-Apolymer15617785.92UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
15Mb, n40S ribosomal protein S12polymer14315488.62UniProt (P48589)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS12
16Nb, o40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
17Ob, p40S ribosomal protein S14-Apolymer13714562.72UniProt (P06367)
Pfam (PF00411)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP59A,Small ribosomal subunit protein uS11-A
18Qb, r40S ribosomal protein S16-Apolymer14315877.52UniProt (P0CX51)
Pfam (PF00380)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
19Rb, s40S ribosomal protein S17-Bpolymer13615835.42UniProt (P14127)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP51B,Small ribosomal subunit protein eS17-B
20Sb, t40S ribosomal protein S18-Apolymer14617071.62UniProt (P0CX55)
Pfam (PF00416)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS13-A
21Tb, u40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
22Ub, v40S ribosomal protein S20polymer12113929.02UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein uS10
23Vb, w40S ribosomal protein S21-Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
24Wb, x40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
25Xb, y40S ribosomal protein S23-Apolymer14516073.92UniProt (P0CX29)
Pfam (PF00164)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
26Yb, z40S ribosomal protein S24-Apolymer13515362.82UniProt (P0CX31)
Pfam (PF01282)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
27Zb, 040S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
28ab, 140S ribosomal protein S26-Apolymer11913538.92UniProt (P39938)
Pfam (PF01283)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS26-A
29bb, 240S ribosomal protein S27-Apolymer828893.42UniProt (P35997)
Pfam (PF01667)
In PDB		Saccharomyces cerevisiae (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
30db, 440S ribosomal protein S29-Apolymer566675.72UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
31eb, 540S ribosomal protein S30-Apolymer637137.52UniProt (P0CX33)
Pfam (PF04758)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Small ribosomal subunit protein eS30-A
32fb, 6Ubiquitin-40S ribosomal protein S31polymer15217254.22UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
33gb, 7Guanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.22UniProt (P38011)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
34cb, 340S ribosomal protein S28-Bpolymer677578.82UniProt (P0C0X0)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiae (Baker's yeast)S33,Small ribosomal subunit protein eS28-B,YS27
354b, Bb5S rRNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae (Baker's yeast)
363b, Ca5.8S rRNApolymer15850682.92GenBank (1331532632)Saccharomyces cerevisiae (Baker's yeast)
37Ay, Da60S ribosomal protein L2-Apolymer25427463.62UniProt (P0CX45)
Pfam (PF03947)
Pfam (PF00181)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
38By, Ea60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
39Cy, Fa60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
40Dy, Ga60S ribosomal protein L5polymer29733764.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
41Ey, Ha60S ribosomal protein L6-Apolymer17620000.62UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
42Fy, Ia60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
43Gy, Ja60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
44Hy, Ka60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
45Iy, La60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
46Jy, Ma60S ribosomal protein L11-Apolymer17419755.72UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-A,RP39,YL22
47Ly, Na60S ribosomal protein L13-Apolymer19922604.22UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
48My, Oa60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
49Ny, Pa60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
50Oy, Qa60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
51Py, A60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
52Qy, B60S ribosomal protein L18-Apolymer18620609.32UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
53Ry, C60S ribosomal protein L19-Apolymer18921762.32UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
54Sy, D60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
55Ty, E60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
56Uy, F60S ribosomal protein L22-Apolymer12113711.42UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
57Vy, G60S ribosomal protein L23-Apolymer13714494.02UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
58Wy, H60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
59Xy, I60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
60Yy, J60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
61Zy, K60S ribosomal protein L27-Apolymer13615568.42UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
62ay, L60S ribosomal protein L28polymer14916761.72UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
63by, M60S ribosomal protein L29polymer596691.92UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
64cy, N60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
65dy, O60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
66ey, P60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
67fy, Q60S ribosomal protein L33-Apolymer10712177.12UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
68gy, R60S ribosomal protein L34-Apolymer12113673.22UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
69hb, S60S ribosomal protein L35-Apolymer12013942.62UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
70ib, T60S ribosomal protein L36-Apolymer10011151.32UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
71jb, U60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
72kb, V60S ribosomal protein L38polymer788845.62UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
73lb, W60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
74mb, XUbiquitin-60S ribosomal protein L40polymer12814583.12UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
75nb, Y60S ribosomal protein L41-Apolymer253354.22Saccharomyces cerevisiae (Baker's yeast)
76ob, Z60S ribosomal protein L42-Apolymer10612246.72UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
77pb, aa60S ribosomal protein L43-Apolymer9210113.02UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
781b, Aa25S rRNApolymer33961097493.92GenBank (834774822)Saccharomyces cerevisiae (Baker's yeast)
796b, 8tRNApolymer7624410.42GenBank (176427)Saccharomyces cerevisiae (Baker's yeast)
80ba60S acidic ribosomal protein P0polymer31133617.91UniProt (P05317)
Pfam (PF17777)
Pfam (PF00428)
Pfam (PF00466)
In PDB		Saccharomyces cerevisiae (Baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains159
Total formula weight6294106.3
All*Total formula weight6294106.3
*Water molecules are not included.

222415

PDB entries from 2024-07-10

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