6T83
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, BC (2b, a) | 18S rRNA | polymer | 1800 | 579761.9 | 2 | GenBank (874346701) | Saccharomyces cerevisiae (Baker's yeast) | |
| 2 | B, CC (Ab, b) | 40S ribosomal protein S0-A | polymer | 252 | 28051.3 | 2 | UniProt (P32905) Pfam (PF00318) | Saccharomyces cerevisiae (Baker's yeast) | Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A |
| 3 | C, DC (Ba, c) | 40S ribosomal protein S1-A | polymer | 255 | 28798.5 | 2 | UniProt (P33442) Pfam (PF01015) | Saccharomyces cerevisiae (Baker's yeast) | RP10A,Small ribosomal subunit protein eS1-A |
| 4 | D, RC (Pb, q) | 40S ribosomal protein S15 | polymer | 142 | 16031.9 | 2 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae (Baker's yeast) | RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21 |
| 5 | E, EC (Cb, d) | 40S ribosomal protein S2 | polymer | 254 | 27490.8 | 2 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (Baker's yeast) | Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5 |
| 6 | F, FC (Db, e) | 40S ribosomal protein S3 | polymer | 240 | 26542.8 | 2 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae (Baker's yeast) | RP13,Small ribosomal subunit protein uS3,YS3 |
| 7 | G, GC (Eb, f) | 40S ribosomal protein S4-A | polymer | 261 | 29469.3 | 2 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Saccharomyces cerevisiae (Baker's yeast) | RP5,S7,Small ribosomal subunit protein eS4-A,YS6 |
| 8 | H, HC (Fb, g) | Rps5p | polymer | 225 | 25072.6 | 2 | UniProt (A0A1L4AA68) Pfam (PF00177) | Saccharomyces cerevisiae (Baker's yeast) | |
| 9 | I, IC (Gb, h) | 40S ribosomal protein S6-A | polymer | 236 | 27054.5 | 2 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae (Baker's yeast) | RP9,S10,Small ribosomal subunit protein eS6-A,YS4 |
| 10 | J, JC (Hb, i) | 40S ribosomal protein S7-A | polymer | 190 | 21658.2 | 2 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae (Baker's yeast) | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 11 | K, KC (Ib, j) | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 2 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae (Baker's yeast) | RP19,S14,Small ribosomal subunit protein eS8-A,YS9 |
| 12 | L, LC (Jb, k) | 40S ribosomal protein S9-A | polymer | 197 | 22487.9 | 2 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (Baker's yeast) | RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11 |
| 13 | M, MC (Kb, l) | 40S ribosomal protein S10-A | polymer | 105 | 12757.4 | 2 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein eS10-A |
| 14 | N, NC (Lb, m) | 40S ribosomal protein S11-A | polymer | 156 | 17785.9 | 2 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae (Baker's yeast) | RP41,S18,Small ribosomal subunit protein uS17-A,YS12 |
| 15 | O, OC (Mb, n) | 40S ribosomal protein S12 | polymer | 143 | 15488.6 | 2 | UniProt (P48589) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein eS12 |
| 16 | P, PC (Nb, o) | 40S ribosomal protein S13 | polymer | 151 | 17059.9 | 2 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (Baker's yeast) | S27a,Small ribosomal subunit protein uS15,YS15 |
| 17 | Q, QC (Ob, p) | 40S ribosomal protein S14-A | polymer | 137 | 14562.7 | 2 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (Baker's yeast) | RP59A,Small ribosomal subunit protein uS11-A |
| 18 | R, SC (Qb, r) | 40S ribosomal protein S16-A | polymer | 143 | 15877.5 | 2 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae (Baker's yeast) | RP61R,Small ribosomal subunit protein uS9-A |
| 19 | S, TC (Rb, s) | 40S ribosomal protein S17-B | polymer | 136 | 15835.4 | 2 | UniProt (P14127) Pfam (PF00833) | Saccharomyces cerevisiae (Baker's yeast) | RP51B,Small ribosomal subunit protein eS17-B |
| 20 | T, UC (Sb, t) | 40S ribosomal protein S18-A | polymer | 146 | 17071.6 | 2 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein uS13-A |
| 21 | U, VC (Tb, u) | 40S ribosomal protein S19-A | polymer | 144 | 15942.1 | 2 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (Baker's yeast) | RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A |
| 22 | V, WC (Ub, v) | 40S ribosomal protein S20 | polymer | 121 | 13929.0 | 2 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein uS10 |
| 23 | W, XC (Vb, w) | 40S ribosomal protein S21-A | polymer | 87 | 9758.8 | 2 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (Baker's yeast) | S26,Small ribosomal subunit protein eS21-A,YS25 |
| 24 | X, YC (Wb, x) | 40S ribosomal protein S22-A | polymer | 130 | 14650.1 | 2 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae (Baker's yeast) | RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22 |
| 25 | Y, ZC (Xb, y) | 40S ribosomal protein S23-A | polymer | 145 | 16073.9 | 2 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae (Baker's yeast) | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 26 | AD, Z (Yb, z) | 40S ribosomal protein S24-A | polymer | 135 | 15362.8 | 2 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae (Baker's yeast) | RP50,Small ribosomal subunit protein eS24-A |
| 27 | AA, BD (Zb, 0) | 40S ribosomal protein S25-A | polymer | 108 | 12067.3 | 2 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae (Baker's yeast) | RP45,S31,Small ribosomal subunit protein eS25-A,YS23 |
| 28 | BA, CD (ab, 1) | 40S ribosomal protein S26-A | polymer | 119 | 13538.9 | 2 | UniProt (P39938) Pfam (PF01283) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein eS26-A |
| 29 | CA, DD (bb, 2) | 40S ribosomal protein S27-A | polymer | 82 | 8893.4 | 2 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (Baker's yeast) | RP61,Small ribosomal subunit protein eS27-A,YS20 |
| 30 | DA, FD (db, 4) | 40S ribosomal protein S29-A | polymer | 56 | 6675.7 | 2 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae (Baker's yeast) | S36,Small ribosomal subunit protein uS14-A,YS29 |
| 31 | EA, GD (eb, 5) | 40S ribosomal protein S30-A | polymer | 63 | 7137.5 | 2 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae (Baker's yeast) | Small ribosomal subunit protein eS30-A |
| 32 | FA, HD (fb, 6) | Ubiquitin-40S ribosomal protein S31 | polymer | 152 | 17254.2 | 2 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) | Saccharomyces cerevisiae (Baker's yeast) | |
| 33 | GA, ID (gb, 7) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 319 | 34841.2 | 2 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (Baker's yeast) | Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1 |
| 34 | ED, HA (cb, 3) | 40S ribosomal protein S28-B | polymer | 67 | 7578.8 | 2 | UniProt (P0C0X0) Pfam (PF01200) | Saccharomyces cerevisiae (Baker's yeast) | S33,Small ribosomal subunit protein eS28-B,YS27 |
| 35 | IA, KD (4b, Bb) | 5S rRNA | polymer | 121 | 38951.1 | 2 | GenBank (1329886537) | Saccharomyces cerevisiae (Baker's yeast) | |
| 36 | JA, LD (3b, Ca) | 5.8S rRNA | polymer | 158 | 50682.9 | 2 | GenBank (1331532632) | Saccharomyces cerevisiae (Baker's yeast) | |
| 37 | KA, MD (Ay, Da) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 2 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 38 | LA, ND (By, Ea) | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 2 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 39 | MA, OD (Cy, Fa) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 2 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (Baker's yeast) | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 40 | NA, PD (Dy, Ga) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 2 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (Baker's yeast) | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 41 | OA, QD (Ey, Ha) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 2 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (Baker's yeast) | L17,Large ribosomal subunit protein eL6-A,RP18,YL16 |
| 42 | PA, RD (Fy, Ia) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 2 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae (Baker's yeast) | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 43 | QA, SD (Gy, Ja) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 2 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 44 | RA, TD (Hy, Ka) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 2 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 45 | SA, UD (Iy, La) | 60S ribosomal protein L10 | polymer | 221 | 25410.5 | 2 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 46 | TA, VD (Jy, Ma) | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 2 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | L16,Large ribosomal subunit protein uL5-A,RP39,YL22 |
| 47 | UA, WD (Ly, Na) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 2 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL13-A |
| 48 | VA, XD (My, Oa) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 2 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL14-A |
| 49 | WA, YD (Ny, Pa) | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 2 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (Baker's yeast) | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 50 | XA, ZD (Oy, Qa) | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 2 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 51 | AE, YA (Py, A) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 2 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 52 | BE, ZA (Qy, B) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 2 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL18-A,RP28 |
| 53 | AB, CE (Ry, C) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 2 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae (Baker's yeast) | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 54 | BB, DE (Sy, D) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 2 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (Baker's yeast) | L18a,Large ribosomal subunit protein eL20-A |
| 55 | CB, EE (Ty, E) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 2 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL21-A |
| 56 | DB, FE (Uy, F) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 2 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (Baker's yeast) | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 57 | EB, GE (Vy, G) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 2 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 58 | FB, HE (Wy, H) | 60S ribosomal protein L24-A | polymer | 155 | 17661.7 | 2 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (Baker's yeast) | L30,Large ribosomal subunit protein eL24-A,RP29,YL21 |
| 59 | GB, IE (Xy, I) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 2 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 60 | HB, JE (Yy, J) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 2 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 61 | IB, KE (Zy, K) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 2 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL27-A |
| 62 | JB, LE (ay, L) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 2 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 63 | KB, ME (by, M) | 60S ribosomal protein L29 | polymer | 59 | 6691.9 | 2 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL29,YL43 |
| 64 | LB, NE (cy, N) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 2 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 65 | MB, OE (dy, O) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 2 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (Baker's yeast) | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 66 | NB, PE (ey, P) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 2 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL32 |
| 67 | OB, QE (fy, Q) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 2 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (Baker's yeast) | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 68 | PB, RE (gy, R) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 2 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL34-A |
| 69 | QB, SE (hb, S) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 2 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL29-A |
| 70 | RB, TE (ib, T) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 2 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (Baker's yeast) | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 71 | SB, UE (jb, U) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 2 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (Baker's yeast) | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 72 | TB, VE (kb, V) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 2 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL38 |
| 73 | UB, WE (lb, W) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 2 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (Baker's yeast) | L46,Large ribosomal subunit protein eL39,YL40 |
| 74 | VB, XE (mb, X) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14583.1 | 2 | UniProt (P0CH08) Pfam (PF00240) Pfam (PF01020) | Saccharomyces cerevisiae (Baker's yeast) | |
| 75 | WB, YE (nb, Y) | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 76 | XB, ZE (ob, Z) | 60S ribosomal protein L42-A | polymer | 106 | 12246.7 | 2 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (Baker's yeast) | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 77 | AF, YB (pb, aa) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 2 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (Baker's yeast) | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 78 | JD, ZB (1b, Aa) | 25S rRNA | polymer | 3396 | 1097493.9 | 2 | GenBank (834774822) | Saccharomyces cerevisiae (Baker's yeast) | |
| 79 | AC, CF (6b, 8) | tRNA | polymer | 76 | 24410.4 | 2 | GenBank (176427) | Saccharomyces cerevisiae (Baker's yeast) | |
| 80 | BF (ba) | 60S acidic ribosomal protein P0 | polymer | 311 | 33617.9 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Saccharomyces cerevisiae (Baker's yeast) | A0,L10e,Large ribosomal subunit protein uL10 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 159 |
| Total formula weight | 6294106.3 | |
| All* | Total formula weight | 6294106.3 |
