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6T54

Thrombin in Complex with a D-Phe-Pro-2-bromothiophene Derivative

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L)
Prothrombinpolymer364096.51UniProt (P00734)
Pfam (PF09396)
Homo sapiens (Human)Coagulation factor II
2B
(H)
Prothrombinpolymer25929780.21UniProt (P00734)
Pfam (PF00089)
Homo sapiens (Human)Coagulation factor II
3C
(I)
Hirudin variant-2polymer111491.51UniProt (P09945)Hirudo medicinalis
4D, E
(H)
SODIUM IONnon-polymer23.02Chemie (NA)
5F, G
(H)
DIMETHYL SULFOXIDEnon-polymer78.12Chemie (DMS)
6H
(H)
GLYCEROLnon-polymer92.11Chemie (GOL)
7I
(H)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
8J
(H)
(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(5-bromanylthiophen-2-yl)methyl]pyrrolidine-2-carboxamidenon-polymer436.41Chemie (MJK)
9K, L, M
(L, H, I)
waterwater18.0225Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight35368.3
Non-Polymers*Number of molecules7
Total formula weight951.9
All*Total formula weight36320.2
*Water molecules are not included.

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PDB entries from 2025-06-25

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