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6T3M

Thrombin in Complex with a D-Phe-Pro-p-phenol derivative

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L)
Prothrombinpolymer364096.51UniProt (P00734)
Pfam (PF09396)
Homo sapiens (Human)Coagulation factor II
2B
(H)
Prothrombinpolymer25929780.21UniProt (P00734)
Pfam (PF00089)
Homo sapiens (Human)Coagulation factor II
3C
(I)
Hirudin variant-2polymer111491.51UniProt (P09945)Hirudo medicinalis
4D
(H)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
5E, F
(H)
(2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[(4-hydroxyphenyl)methyl]pyrrolidine-2-carboxamidenon-polymer367.42Chemie (MD8)
6G
(H)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
7H, I
(H)
SODIUM IONnon-polymer23.02Chemie (NA)
8J, K, L
(L, H, I)
waterwater18.0247Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight35368.3
Non-Polymers*Number of molecules6
Total formula weight1097.0
All*Total formula weight36465.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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