6S2U
Structure of the catalytic domain of T. thermophilus Rel in complex with AMP and ppGpp
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | (P)ppGpp synthetase I, SpoT/RelA | polymer | 355 | 40705.9 | 1 | UniProt (F6DES6) Pfam (PF13328) Pfam (PF04607) UniProt (by SIFTS) (Q5SHL3) | Thermus thermophilus | |
| 2 | B (A) | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
| 3 | C (A) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 4 | D (A) | [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid | non-polymer | 602.2 | 1 | Chemie (GN3) | |||
| 5 | E (A) | trimethylamine oxide | non-polymer | 75.1 | 1 | Chemie (TMO) | |||
| 6 | F, G (A) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 7 | H (A) | water | water | 18.0 | 21 | Chemie (HOH) |
Sequence modifications
A: 2 - 355 (UniProt: F6DES6)
| PDB | External Database | Details |
|---|---|---|
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 40705.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1128.1 | |
| All* | Total formula weight | 41833.9 |
