6S13
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 23S ribosomal RNA | polymer | 2905 | 940976.0 | 1 | Staphylococcus aureus | ||
2 | B | 5S ribosomal RNA | polymer | 115 | 36974.9 | 1 | GenBank (1434110260) | Staphylococcus aureus | |
3 | C | 50S ribosomal protein L2 | polymer | 274 | 29827.6 | 1 | UniProt (B3VKN3) Pfam (PF00181) Pfam (PF03947) In PDB | Staphylococcus aureus | |
4 | D | 50S ribosomal protein L3 | polymer | 215 | 23199.5 | 1 | UniProt (W8U3W0) Pfam (PF00297) In PDB | Staphylococcus aureus | |
5 | E | 50S ribosomal protein L4 | polymer | 206 | 22364.5 | 1 | UniProt (W8TRC7) Pfam (PF00573) In PDB | Staphylococcus aureus | |
6 | F | 50S ribosomal protein L5 | polymer | 175 | 19731.9 | 1 | UniProt (W8TUC3) Pfam (PF00673) Pfam (PF00281) In PDB | Staphylococcus aureus | |
7 | G | 50S ribosomal protein L6 | polymer | 175 | 19501.2 | 1 | UniProt (W8U3X2) Pfam (PF00347) In PDB | Staphylococcus aureus | |
8 | H | 50S ribosomal protein L13 | polymer | 145 | 16359.4 | 1 | UniProt (W8TUE6) Pfam (PF00572) In PDB | Staphylococcus aureus | |
9 | I | 50S ribosomal protein L14 | polymer | 122 | 13157.3 | 1 | UniProt (A0A077UUA0) Pfam (PF00238) In PDB | Staphylococcus aureus | |
10 | J | 50S ribosomal protein L15 | polymer | 146 | 15628.9 | 1 | UniProt (A0A077UGA7) Pfam (PF00828) In PDB | Staphylococcus aureus | |
11 | K | 50S ribosomal protein L16 | polymer | 137 | 15599.4 | 1 | UniProt (A0A077V4G0) Pfam (PF00252) In PDB | Staphylococcus aureus | |
12 | L | 50S ribosomal protein L17 | polymer | 120 | 13583.5 | 1 | UniProt (A0A077UG91) Pfam (PF01196) In PDB | Staphylococcus aureus | |
13 | M | 50S ribosomal protein L18 | polymer | 119 | 13124.1 | 1 | UniProt (W8TRE0) Pfam (PF00861) In PDB | Staphylococcus aureus | |
14 | N | 50S ribosomal protein L19 | polymer | 114 | 13104.4 | 1 | UniProt (A0A077UVB6) Pfam (PF01245) In PDB | Staphylococcus aureus | |
15 | O | 50S ribosomal protein L20 | polymer | 116 | 13459.9 | 1 | UniProt (A0A077VMP6) Pfam (PF00453) In PDB | Staphylococcus aureus | |
16 | P | 50S ribosomal protein L21 | polymer | 102 | 11354.1 | 1 | UniProt (D7URR3) Pfam (PF00829) In PDB | Staphylococcus aureus | |
17 | Q | 50S ribosomal protein L22 | polymer | 110 | 12100.1 | 1 | UniProt (A0A077UKF9) Pfam (PF00237) In PDB | Staphylococcus aureus | |
18 | R | 50S ribosomal protein L23 | polymer | 89 | 10380.1 | 1 | UniProt (W8TUB4) Pfam (PF00276) In PDB | Staphylococcus aureus | |
19 | S | 50S ribosomal protein L24 | polymer | 103 | 11316.2 | 1 | UniProt (W8TRD5) Pfam (PF00467) Pfam (PF17136) In PDB | Staphylococcus aureus | |
20 | T | 50S ribosomal protein L25 | polymer | 94 | 10462.2 | 1 | UniProt (A0A133Q8Z9) Pfam (PF01386) In PDB | Staphylococcus aureus | General stress protein CTC |
21 | U | 50S ribosomal protein L27 | polymer | 82 | 8911.1 | 1 | UniProt (A0A077ULC5) Pfam (PF01016) In PDB | Staphylococcus aureus | |
22 | V | 50S ribosomal protein L28 | polymer | 58 | 6550.7 | 1 | UniProt (A0A077URJ8) Pfam (PF00830) In PDB | Staphylococcus aureus | |
23 | W | 50S ribosomal protein L29 | polymer | 67 | 7845.9 | 1 | UniProt (A0A077W1J5) Pfam (PF00831) In PDB | Staphylococcus aureus | |
24 | X | 50S ribosomal protein L30 | polymer | 58 | 6434.5 | 1 | UniProt (W8UVN7) Pfam (PF00327) In PDB | Staphylococcus aureus | |
25 | Y | 50S ribosomal protein L31 type B | polymer | 59 | 6909.7 | 1 | UniProt (A0A380EL30) Pfam (PF01197) In PDB | Staphylococcus aureus | |
26 | Z | 50S ribosomal protein L32 | polymer | 48 | 5569.6 | 1 | UniProt (A0A1Q8DAT0) In PDB | Staphylococcus aureus | |
27 | 1 | 50S ribosomal protein L33 | polymer | 47 | 5684.6 | 1 | UniProt (A0A077V2P0) Pfam (PF00471) In PDB | Staphylococcus aureus | |
28 | 2 | 50S ribosomal protein L34 | polymer | 43 | 5252.4 | 1 | UniProt (W8TQ59) Pfam (PF00468) In PDB | Staphylococcus aureus | |
29 | 3 | 50S ribosomal protein L35 | polymer | 64 | 7462.0 | 1 | UniProt (A0A077UL47) Pfam (PF01632) In PDB | Staphylococcus aureus | |
30 | 4 | 50S ribosomal protein L36 | polymer | 37 | 4318.4 | 1 | UniProt (A0A077UGV8) Pfam (PF00444) In PDB | Staphylococcus aureus | |
31 | a | 16S ribosomal RNA | polymer | 1539 | 498060.0 | 1 | GenBank (1248686583) | Staphylococcus aureus | |
32 | b | 30S ribosomal protein S2 | polymer | 226 | 25929.1 | 1 | UniProt (A0A2X2M020) Pfam (PF00318) In PDB | Staphylococcus aureus | |
33 | c | 30S ribosomal protein S3 | polymer | 202 | 22684.2 | 1 | UniProt (A0A077UU26) Pfam (PF07650) Pfam (PF00189) In PDB | Staphylococcus aureus | |
34 | d | 30S ribosomal protein S4 | polymer | 198 | 22849.1 | 1 | UniProt (W8TVK2) Pfam (PF00163) Pfam (PF01479) In PDB | Staphylococcus aureus | |
35 | e | 30S ribosomal protein S5 | polymer | 156 | 16522.1 | 1 | UniProt (W8TUC9) Pfam (PF00333) Pfam (PF03719) In PDB | Staphylococcus aureus | |
36 | f | 30S ribosomal protein S6 | polymer | 95 | 11239.8 | 1 | UniProt (W8TPC6) Pfam (PF01250) In PDB | Staphylococcus aureus | |
37 | g | 30S ribosomal protein S7 | polymer | 152 | 17181.8 | 1 | UniProt (A0A077VHU6) Pfam (PF00177) In PDB | Staphylococcus aureus | |
38 | h | 30S ribosomal protein S8 | polymer | 131 | 14723.1 | 1 | UniProt (W8U8T8) Pfam (PF00410) In PDB | Staphylococcus aureus | |
39 | i | 30S ribosomal protein S9 | polymer | 127 | 14312.3 | 1 | UniProt (A0A1Q4GY48) Pfam (PF00380) In PDB | Staphylococcus aureus | |
40 | j | 30S ribosomal protein S10 | polymer | 97 | 11009.7 | 1 | UniProt (A0A0H2K0A0) Pfam (PF00338) In PDB | Staphylococcus aureus | |
41 | k | 30S ribosomal protein S11 | polymer | 114 | 12047.6 | 1 | UniProt (A0A077UKD6) Pfam (PF00411) In PDB | Staphylococcus aureus | |
42 | l | 30S ribosomal protein S12 | polymer | 135 | 15075.6 | 1 | UniProt (A0A133PZQ5) Pfam (PF00164) In PDB | Staphylococcus aureus | |
43 | m | 30S ribosomal protein S13 | polymer | 104 | 11991.7 | 1 | UniProt (W8U8U6) Pfam (PF00416) In PDB | Staphylococcus aureus | |
44 | n | 30S ribosomal protein S14 type Z | polymer | 60 | 7186.6 | 1 | UniProt (A0A077UGW7) Pfam (PF00253) In PDB | Staphylococcus aureus | |
45 | o | 30S ribosomal protein S15 | polymer | 88 | 10503.1 | 1 | UniProt (W8U6H8) Pfam (PF00312) In PDB | Staphylococcus aureus | |
46 | p | 30S ribosomal protein S16 | polymer | 89 | 9993.5 | 1 | UniProt (W8U6K4) Pfam (PF00886) In PDB | Staphylococcus aureus | |
47 | q | 30S ribosomal protein S17 | polymer | 80 | 9366.9 | 1 | UniProt (A0A077VLD5) Pfam (PF00366) In PDB | Staphylococcus aureus | |
48 | r | 30S ribosomal protein S18 | polymer | 54 | 6404.6 | 1 | UniProt (A0A077UZF4) Pfam (PF01084) In PDB | Staphylococcus aureus | |
49 | s | 30S ribosomal protein S19 | polymer | 80 | 9205.6 | 1 | UniProt (A0A133PYC3) Pfam (PF00203) In PDB | Staphylococcus aureus | |
50 | t | 30S ribosomal protein S20 | polymer | 81 | 8779.1 | 1 | UniProt (W8UXC3) Pfam (PF01649) In PDB | Staphylococcus aureus | |
51 | u | 30S ribosomal protein S21 | polymer | 52 | 6241.3 | 1 | UniProt (A0A380DEA2) In PDB | Staphylococcus aureus | |
52 | v | Ribosome hibernation promoting factor | polymer | 162 | 18955.5 | 1 | UniProt (W8USK0) Pfam (PF02482) Pfam (PF16321) UniProt (by SIFTS) (D2Z097) In PDB | Staphylococcus aureus | HPF |
Sequence modifications
Q: 1 - 110 (UniProt: A0A077UKF9)
v: 2 - 187 (UniProt: W8USK0)
PDB | External Database | Details |
---|---|---|
- | Arg 88 | deletion |
- | Ala 89 | deletion |
PDB | External Database | Details |
---|---|---|
- | Glu 107 | deletion |
- | Val 108 | deletion |
- | Phe 109 | deletion |
- | Val 110 | deletion |
- | Ala 111 | deletion |
- | Glu 112 | deletion |
- | Leu 113 | deletion |
- | Gln 114 | deletion |
- | Glu 115 | deletion |
- | Met 116 | deletion |
- | Gln 117 | deletion |
- | Glu 118 | deletion |
- | Thr 119 | deletion |
- | Gln 120 | deletion |
- | Val 121 | deletion |
- | Asp 122 | deletion |
- | Asn 123 | deletion |
- | Asp 124 | deletion |
- | Ala 125 | deletion |
- | Tyr 126 | deletion |
- | Asp 127 | deletion |
- | Asp 128 | deletion |
- | Asn 129 | deletion |
- | Glu 130 | deletion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 52 |
Total formula weight | 2107406.7 | |
All* | Total formula weight | 2107406.7 |