6S0U
The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and 2-oxoglutarate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Kanamycin B dioxygenase | polymer | 279 | 30872.0 | 6 | UniProt (Q6L732) Pfam (PF05721) | Streptomyces kanamyceticus | Kanamycin biosynthesis protein J |
| 2 | G, I, L, O, Q... (A, B, C, D, E...) | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 6 | Chemie (AKG) | |||
| 3 | H, J, M, P, R... (A, B, C, D, E...) | NICKEL (II) ION | non-polymer | 58.7 | 6 | Chemie (NI) | |||
| 4 | K, W (B, F) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 5 | N, S (C, E) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 6 | T (E) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 7 | AA, BA, CA, X, Y... (D, E, F, A, B...) | water | water | 18.0 | 1161 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 277 (UniProt: Q6L732)
| PDB | External Database | Details |
|---|---|---|
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 185232.3 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 1534.9 | |
| All* | Total formula weight | 186767.2 |
