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6RXX

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state C, Poly-Ala

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(UA)
Periodic tryptophan protein 2-like proteinpolymer904100817.51UniProt (G0SF93)
Pfam (PF00400)
Pfam (PF04003)
Chaetomium thermophilum
2B
(UC)
Utp3polymer64873214.61UniProt (G0S4H3)
Pfam (PF04000)
Pfam (PF09368)
Chaetomium thermophilum
3C
(UF)
Utp6polymer41446924.81UniProt (G0S387)
Pfam (PF08640)
Chaetomium thermophilum
4D
(UG)
Utp7polymer55863629.41UniProt (G0RZ99)
Pfam (PF00400)
Pfam (PF08149)
Chaetomium thermophilum
5E
(UK)
U3 small nucleolar RNA-associated protein 11polymer27031379.71UniProt (G0SF32)
Pfam (PF03998)
Chaetomium thermophilumU3 snoRNA-associated protein 11
6F
(UL)
Utp12polymer962107573.01UniProt (G0RZL9)
Pfam (PF00400)
Pfam (PF04003)
Chaetomium thermophilum
7G
(UM)
Utp13polymer912100430.41UniProt (G0SG95)
Pfam (PF00400)
Pfam (PF08625)
Chaetomium thermophilum
8H
(UN)
Utp14polymer938104741.41UniProt (G0S8Y4)
Pfam (PF04615)
Chaetomium thermophilum
9I
(UR)
Utp18polymer61869055.11UniProt (G0SBN9)Chaetomium thermophilum
10J
(UU)
Putative U3 snoRNP proteinpolymer1049115122.01UniProt (G0S872)
Pfam (PF00400)
Pfam (PF04192)
Chaetomium thermophilum
11K
(UX)
Utp24polymer19322136.01Chaetomium thermophilum
12L
(CJ)
Imp3polymer18321802.41UniProt (G0SDL4)
Pfam (PF00163)
Pfam (PF01479)
Chaetomium thermophilum
13M
(CK)
Putative U3 small nucleolar ribonucleoproteinpolymer29734216.31UniProt (G0SE90)
Pfam (PF04427)
Chaetomium thermophilum
14N
(CL)
Putative U3 small nucleolar ribonucleoprotein proteinpolymer78586082.11UniProt (G0S9I7)
Pfam (PF04006)
Chaetomium thermophilum
15O
(CM)
Sof1polymer44650869.81UniProt (G0RY94)
Pfam (PF00400)
Pfam (PF04158)
Chaetomium thermophilum
16P, Q
(CN, CO)
Emg1polymer25227936.22UniProt (G0SAY9)
Pfam (PF03587)
Chaetomium thermophilum
17R
(CP)
KRR1 small subunit processome componentpolymer32237500.81UniProt (G0S3V7)
Pfam (PF17903)
Pfam (PF21800)
Chaetomium thermophilumKRR-R motif-containing protein 1
18S
(CQ)
Pre-rRNA-processing protein PNO1polymer25928715.01UniProt (G0S3T2)
Pfam (PF22891)
Chaetomium thermophilum
19T
(Ca)
40S ribosomal protein S1polymer25529245.21UniProt (G0S7T8)
Pfam (PF01015)
Chaetomium thermophilum
20U
(Cc)
40S ribosomal protein s5-like proteinpolymer21223679.21UniProt (G0S1Z0)
Pfam (PF00177)
Chaetomium thermophilum
21V
(Ce)
40S ribosomal protein S7polymer20323084.71UniProt (G0S8C4)
Pfam (PF01251)
Chaetomium thermophilum
22W
(Cg)
40S ribosomal protein s9-like proteinpolymer19022029.81UniProt (G0S0Z4)
Pfam (PF00163)
Pfam (PF01479)
Chaetomium thermophilum
23X
(Ch)
40S ribosomal protein S13-like proteinpolymer15116912.91UniProt (G0RZM9)
Pfam (PF08069)
Pfam (PF00312)
Chaetomium thermophilum
24Y
(Ci)
40S ribosomal protein S14-like proteinpolymer15016071.51UniProt (G0SFL1)
Pfam (PF00411)
Chaetomium thermophilum
25Z
(Cj)
40S ribosomal protein S16-like proteinpolymer14315962.81UniProt (G0SBR7)
Pfam (PF00380)
Chaetomium thermophilum
26AA
(Cm)
40S ribosomal protein S22-like proteinpolymer13014905.51UniProt (G0SHI0)
Pfam (PF00410)
Chaetomium thermophilum
27BA
(Cn)
40S ribosomal protein s23-like proteinpolymer14515934.71UniProt (G0RY17)
Pfam (PF00164)
Chaetomium thermophilum
28CA
(Cp)
40S ribosomal protein S28-like proteinpolymer687742.01UniProt (G0S9M9)
Pfam (PF01200)
Chaetomium thermophilum
29DA
(Cq)
Ribosomal protein s27-like proteinpolymer828923.61UniProt (G0S1S4)
Pfam (PF01667)
Chaetomium thermophilum
30EA
(CU)
Faf1polymer31134576.61UniProt (G0S5F1)Chaetomium thermophilum
31FA
(C1)
35S ribosomal RNApolymer1859599293.31Chaetomium thermophilum
32GA
(UV)
U3 small nucleolar RNA-associated protein 22polymer1171131105.41UniProt (G0S2E0)
Pfam (PF17406)
Pfam (PF17407)
Pfam (PF03813)
Pfam (PF17403)
Pfam (PF17404)
Pfam (PF17405)
Chaetomium thermophilum
33HA
(CV)
Rrp7polymer32236366.61UniProt (G0SDB8)
Pfam (PF17799)
Pfam (PF12923)
Chaetomium thermophilum
34IA
(Cl)
Putative ribosomal proteinpolymer15617826.71UniProt (G0S6J7)
Pfam (PF00416)
Chaetomium thermophilum
35JA
(CH)
RNA 3'-terminal phosphate cyclase-like proteinpolymer41143399.81UniProt (G0S0B1)
Pfam (PF01137)
Pfam (PF05189)
Chaetomium thermophilum
36KA
(CI)
Bms1polymer1163134172.31UniProt (G0S445)
Pfam (PF08142)
Pfam (PF04950)
Chaetomium thermophilum
37LA, MA
(CR, CS)
Kre33polymer1073119795.12UniProt (G0S273)
Pfam (PF08351)
Pfam (PF05127)
Pfam (PF13718)
Pfam (PF13725)
Chaetomium thermophilum18S rRNA cytosine acetyltransferase
38NA
(Cb)
40S ribosomal protein S4polymer26429800.81UniProt (G0S1A6)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Chaetomium thermophilum
39OA
(Cd)
40S ribosomal protein S6polymer23927490.11UniProt (G0RY43)
Pfam (PF01092)
Chaetomium thermophilum
40PA
(Cf)
40S ribosomal protein S8polymer20223102.41UniProt (G0RY45)
Pfam (PF01201)
Chaetomium thermophilum
41QA
(Ck)
40S ribosomal protein S11-like proteinpolymer16118698.21UniProt (G0SF00)
Pfam (PF16205)
Pfam (PF00366)
Chaetomium thermophilum
42RA
(Co)
40S ribosomal protein S24polymer13615535.31UniProt (P0CU28)
Pfam (PF01282)
Chaetomium thermophilum
43SA
(CW)
Ribosome biogenesis protein ENP2polymer66875833.81UniProt (G0S902)
Pfam (PF08159)
Chaetomium thermophilum
44TA
(UT)
Utp20polymer2612295278.91UniProt (G0SHP3)
Pfam (PF07539)
Pfam (PF20416)
Chaetomium thermophilum
45UA
(CZ)
Bfr2polymer60969040.61UniProt (G0SAJ6)
Pfam (PF13339)
Pfam (PF08164)
Chaetomium thermophilum
46VA
(UB)
Utp2polymer907103960.71UniProt (G0SDW0)
Pfam (PF04147)
Chaetomium thermophilum
47WA
(UD)
Utp4polymer88497696.51UniProt (G0SCT7)
Pfam (PF00400)
Chaetomium thermophilum
48XA
(UJ)
UTP10polymer1802198508.41UniProt (G0S5L1)
Pfam (PF12397)
Pfam (PF08146)
Chaetomium thermophilum
49YA
(UO)
Utp15polymer55760524.11UniProt (G0SEI5)
Pfam (PF00400)
Pfam (PF09384)
Chaetomium thermophilum
50ZA
(UQ)
Utp17polymer960105039.71UniProt (G0SCS8)
Pfam (PF00400)
Chaetomium thermophilum
51AB
(CX)
Enp1polymer48054319.61UniProt (G0S5J4)
Pfam (PF05291)
Chaetomium thermophilum
52BB, EB
(UI, UE)
Utp5polymer41044663.42UniProt (G0RYX2)
Pfam (PF04003)
Chaetomium thermophilum
53CB
(UP)
Utp16polymer36440726.01UniProt (G0S612)
Pfam (PF08297)
Chaetomium thermophilum
54DB
(UH)
Utp8polymer930102421.11UniProt (P0CT47)Chaetomium thermophilum
55FB
(US)
Noc4polymer54963331.71UniProt (G0RZL4)
Pfam (PF03914)
Chaetomium thermophilum
56GB, HB
(CA, CB)
Nop1polymer31332960.82UniProt (G0SGY2)
Pfam (PF01269)
Chaetomium thermophilum
57IB
(CC)
Putative nucleolar proteinpolymer52357830.71UniProt (G0S2U4)
Pfam (PF01798)
Pfam (PF08156)
Chaetomium thermophilum
58JB
(CD)
Nop58polymer58264292.11UniProt (G0RYF6)
Pfam (PF01798)
Pfam (PF08156)
Chaetomium thermophilum
59KB, LB
(CE, CF)
Snu13polymer12713831.92UniProt (G0SGM0)
Pfam (PF01248)
Chaetomium thermophilum
60MB
(CG)
Rrp9polymer63069610.41UniProt (G0SG51)
Pfam (PF00400)
Chaetomium thermophilum
61NB
(CT)
Fcf2polymer20322569.11UniProt (G0S4E3)
Pfam (PF08698)
Chaetomium thermophilum
62OB
(C2)
U3 snoRNApolymer23274578.91Chaetomium thermophilum
63PB
(Cr)
40S ribosomal protein S19-like proteinpolymer15317151.31UniProt (G0SFK8)
Pfam (PF01090)
Chaetomium thermophilum
64QB, RB
(UX, Cq)
ZINC IONnon-polymer65.42Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains68
Total formula weight4451157.9
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight4451288.7
*Water molecules are not included.

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PDB entries from 2024-11-20

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