6RXT
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | UA | Periodic tryptophan protein 2-like protein | polymer | 904 | 100817.5 | 1 | UniProt (G0SF93) Pfam (PF00400) Pfam (PF04003) In PDB | Chaetomium thermophilum | |
| 2 | UB | Utp2 | polymer | 907 | 103960.7 | 1 | UniProt (G0SDW0) Pfam (PF04147) In PDB | Chaetomium thermophilum | |
| 3 | UC | Utp3 | polymer | 648 | 73214.6 | 1 | UniProt (G0S4H3) Pfam (PF04000) Pfam (PF09368) In PDB | Chaetomium thermophilum | |
| 4 | UD | Utp4 | polymer | 884 | 97696.5 | 1 | UniProt (G0SCT7) Pfam (PF00400) In PDB | Chaetomium thermophilum | |
| 5 | UF | Utp6 | polymer | 414 | 46924.8 | 1 | UniProt (G0S387) Pfam (PF08640) In PDB | Chaetomium thermophilum | |
| 6 | UG | Utp7 | polymer | 558 | 63629.4 | 1 | UniProt (G0RZ99) Pfam (PF00400) Pfam (PF08149) In PDB | Chaetomium thermophilum | |
| 7 | UJ | UTP10 | polymer | 1802 | 198508.4 | 1 | UniProt (G0S5L1) Pfam (PF12397) Pfam (PF08146) In PDB | Chaetomium thermophilum | |
| 8 | UK | U3 small nucleolar RNA-associated protein 11 | polymer | 270 | 31379.7 | 1 | UniProt (G0SF32) Pfam (PF03998) In PDB | Chaetomium thermophilum | U3 snoRNA-associated protein 11 |
| 9 | UL | Utp12 | polymer | 962 | 107573.0 | 1 | UniProt (G0RZL9) Pfam (PF00400) Pfam (PF04003) In PDB | Chaetomium thermophilum | |
| 10 | UM | Utp13" | polymer | 912 | 100430.4 | 1 | UniProt (G0SG95) Pfam (PF00400) Pfam (PF08625) In PDB | Chaetomium thermophilum | |
| 11 | UN | Utp14 | polymer | 938 | 104741.4 | 1 | UniProt (G0S8Y4) Pfam (PF04615) In PDB | Chaetomium thermophilum | |
| 12 | UO | Utp15 | polymer | 557 | 60524.1 | 1 | UniProt (G0SEI5) Pfam (PF00400) Pfam (PF09384) In PDB | Chaetomium thermophilum | |
| 13 | UQ | Utp17 | polymer | 960 | 105039.7 | 1 | UniProt (G0SCS8) Pfam (PF00400) In PDB | Chaetomium thermophilum | |
| 14 | UR | Utp18 | polymer | 618 | 69055.1 | 1 | UniProt (G0SBN9) In PDB | Chaetomium thermophilum | |
| 15 | UU | Putative U3 snoRNP protein | polymer | 1049 | 115122.0 | 1 | UniProt (G0S872) Pfam (PF00400) Pfam (PF04192) In PDB | Chaetomium thermophilum | |
| 16 | UX | Utp24 | polymer | 193 | 22136.0 | 1 | Chaetomium thermophilum | ||
| 17 | UZ | Utp30 | polymer | 391 | 43700.5 | 1 | UniProt (G0S7X0) Pfam (PF00687) In PDB | Chaetomium thermophilum | |
| 18 | CA, CB | Nop1 | polymer | 313 | 32960.8 | 2 | UniProt (G0SGY2) Pfam (PF01269) In PDB | Chaetomium thermophilum | |
| 19 | CC | Putative nucleolar protein | polymer | 523 | 57830.7 | 1 | UniProt (G0S2U4) Pfam (PF08156) Pfam (PF01798) In PDB | Chaetomium thermophilum | |
| 20 | CD | Nop58 | polymer | 582 | 64292.1 | 1 | UniProt (G0RYF6) Pfam (PF08156) Pfam (PF01798) In PDB | Chaetomium thermophilum | |
| 21 | CE, CF | snu13 | polymer | 127 | 13831.9 | 2 | UniProt (G0SGM0) Pfam (PF01248) In PDB | Chaetomium thermophilum | |
| 22 | CG | Rrp9 | polymer | 630 | 69610.4 | 1 | UniProt (G0SG51) Pfam (PF00400) In PDB | Chaetomium thermophilum | |
| 23 | CH | RNA 3'-terminal phosphate cyclase-like protein | polymer | 411 | 43399.8 | 1 | UniProt (G0S0B1) Pfam (PF01137) Pfam (PF05189) In PDB | Chaetomium thermophilum | |
| 24 | CI | Bms1 | polymer | 1163 | 134172.3 | 1 | UniProt (G0S445) Pfam (PF08142) Pfam (PF04950) In PDB | Chaetomium thermophilum | |
| 25 | CJ | Imp3 | polymer | 183 | 21802.4 | 1 | UniProt (G0SDL4) Pfam (PF00163) Pfam (PF01479) In PDB | Chaetomium thermophilum | |
| 26 | CK | Putative U3 small nucleolar ribonucleoprotein | polymer | 297 | 34216.3 | 1 | UniProt (G0SE90) Pfam (PF04427) In PDB | Chaetomium thermophilum | |
| 27 | CL | Putative U3 small nucleolar ribonucleoprotein protein | polymer | 785 | 86082.1 | 1 | UniProt (G0S9I7) Pfam (PF04006) In PDB | Chaetomium thermophilum | |
| 28 | CM | Sof1 | polymer | 446 | 50869.8 | 1 | UniProt (G0RY94) Pfam (PF00400) Pfam (PF04158) In PDB | Chaetomium thermophilum | |
| 29 | CN, CO | Emg1 | polymer | 252 | 27936.2 | 2 | UniProt (G0SAY9) Pfam (PF03587) In PDB | Chaetomium thermophilum | |
| 30 | CP | KRR1 small subunit processome component | polymer | 322 | 37500.8 | 1 | UniProt (G0S3V7) Pfam (PF17903) Pfam (PF21800) In PDB | Chaetomium thermophilum | KRR-R motif-containing protein 1 |
| 31 | CQ | Pre-rRNA-processing protein PNO1 | polymer | 259 | 28715.0 | 1 | UniProt (G0S3T2) In PDB | Chaetomium thermophilum | |
| 32 | CR, CS | Kre33 | polymer | 1073 | 119795.1 | 2 | UniProt (G0S273) Pfam (PF08351) Pfam (PF05127) Pfam (PF13718) Pfam (PF13725) In PDB | Chaetomium thermophilum | |
| 33 | CT | Fcf2 | polymer | 203 | 22569.1 | 1 | UniProt (G0S4E3) Pfam (PF08698) In PDB | Chaetomium thermophilum | |
| 34 | Ca | 40S ribosomal protein S1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) In PDB | Chaetomium thermophilum | |
| 35 | Cc | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) In PDB | Chaetomium thermophilum | |
| 36 | Ce | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) In PDB | Chaetomium thermophilum | |
| 37 | Cg | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) In PDB | Chaetomium thermophilum | |
| 38 | Ch | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) In PDB | Chaetomium thermophilum | |
| 39 | Ci | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) In PDB | Chaetomium thermophilum | |
| 40 | Cj | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) In PDB | Chaetomium thermophilum | |
| 41 | Cm | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) In PDB | Chaetomium thermophilum | |
| 42 | Cn | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) In PDB | Chaetomium thermophilum | |
| 43 | Cp | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) In PDB | Chaetomium thermophilum | |
| 44 | CU | Faf1 | polymer | 311 | 34576.6 | 1 | UniProt (G0S5F1) In PDB | Chaetomium thermophilum | |
| 45 | C1 | 35S ribosomal RNA | polymer | 2352 | 758475.3 | 1 | Chaetomium thermophilum | ||
| 46 | C2 | U3 snoRNA | polymer | 230 | 73966.5 | 1 | Chaetomium thermophilum | ||
| 47 | UH | Utp8 | polymer | 930 | 102421.1 | 1 | UniProt (P0CT47) In PDB | Chaetomium thermophilum | |
| 48 | UE, UI | Utp5" | polymer | 410 | 44663.4 | 2 | UniProt (G0RYX2) Pfam (PF04003) In PDB | Chaetomium thermophilum | |
| 49 | US | Noc4 | polymer | 549 | 63331.7 | 1 | UniProt (G0RZL4) Pfam (PF03914) In PDB | Chaetomium thermophilum | |
| 50 | Cl | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) In PDB | Chaetomium thermophilum | |
| 51 | CX | Enp1 | polymer | 480 | 54319.6 | 1 | UniProt (G0S5J4) Pfam (PF05291) In PDB | Chaetomium thermophilum | |
| 52 | UP | Utp16 | polymer | 364 | 40726.0 | 1 | UniProt (G0S612) Pfam (PF08297) In PDB | Chaetomium thermophilum | |
| 53 | UX | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 54 | CI | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 55 | CI | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 3905101.1 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 612.9 | |
| All* | Total formula weight | 3905714.0 |
