6RXT
Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (UA) | Periodic tryptophan protein 2-like protein | polymer | 904 | 100817.5 | 1 | UniProt (G0SF93) Pfam (PF00400) Pfam (PF04003) | Chaetomium thermophilum | |
| 2 | B (UB) | Utp2 | polymer | 907 | 103960.7 | 1 | UniProt (G0SDW0) Pfam (PF04147) | Chaetomium thermophilum | |
| 3 | C (UC) | Utp3 | polymer | 648 | 73214.6 | 1 | UniProt (G0S4H3) Pfam (PF04000) Pfam (PF09368) | Chaetomium thermophilum | |
| 4 | D (UD) | Utp4 | polymer | 884 | 97696.5 | 1 | UniProt (G0SCT7) Pfam (PF00400) | Chaetomium thermophilum | |
| 5 | E (UF) | Utp6 | polymer | 414 | 46924.8 | 1 | UniProt (G0S387) Pfam (PF08640) Pfam (PF23233) | Chaetomium thermophilum | |
| 6 | F (UG) | Utp7 | polymer | 558 | 63629.4 | 1 | UniProt (G0RZ99) Pfam (PF00400) Pfam (PF08149) | Chaetomium thermophilum | |
| 7 | G (UJ) | UTP10 | polymer | 1802 | 198508.4 | 1 | UniProt (G0S5L1) Pfam (PF12397) Pfam (PF23243) Pfam (PF08146) | Chaetomium thermophilum | |
| 8 | H (UK) | U3 small nucleolar RNA-associated protein 11 | polymer | 270 | 31379.7 | 1 | UniProt (G0SF32) Pfam (PF03998) | Chaetomium thermophilum | U3 snoRNA-associated protein 11 |
| 9 | I (UL) | Utp12 | polymer | 962 | 107573.0 | 1 | UniProt (G0RZL9) Pfam (PF25173) Pfam (PF25172) Pfam (PF04003) | Chaetomium thermophilum | |
| 10 | J (UM) | Utp13" | polymer | 912 | 100430.4 | 1 | UniProt (G0SG95) Pfam (PF00400) Pfam (PF08625) | Chaetomium thermophilum | |
| 11 | K (UN) | Utp14 | polymer | 938 | 104741.4 | 1 | UniProt (G0S8Y4) Pfam (PF04615) | Chaetomium thermophilum | |
| 12 | L (UO) | Utp15 | polymer | 557 | 60524.1 | 1 | UniProt (G0SEI5) Pfam (PF00400) Pfam (PF09384) | Chaetomium thermophilum | |
| 13 | M (UQ) | Utp17 | polymer | 960 | 105039.7 | 1 | UniProt (G0SCS8) Pfam (PF23869) | Chaetomium thermophilum | |
| 14 | N (UR) | Utp18 | polymer | 618 | 69055.1 | 1 | UniProt (G0SBN9) | Chaetomium thermophilum | |
| 15 | O (UU) | Putative U3 snoRNP protein | polymer | 1049 | 115122.0 | 1 | UniProt (G0S872) Pfam (PF25171) Pfam (PF25168) Pfam (PF04192) | Chaetomium thermophilum | |
| 16 | P (UX) | Utp24 | polymer | 193 | 22136.0 | 1 | Chaetomium thermophilum | ||
| 17 | Q (UZ) | Utp30 | polymer | 391 | 43700.5 | 1 | UniProt (G0S7X0) Pfam (PF00687) | Chaetomium thermophilum | |
| 18 | R, S (CA, CB) | Nop1 | polymer | 313 | 32960.8 | 2 | UniProt (G0SGY2) Pfam (PF01269) | Chaetomium thermophilum | |
| 19 | T (CC) | Putative nucleolar protein | polymer | 523 | 57830.7 | 1 | UniProt (G0S2U4) Pfam (PF08156) Pfam (PF01798) | Chaetomium thermophilum | |
| 20 | U (CD) | Nop58 | polymer | 582 | 64292.1 | 1 | UniProt (G0RYF6) Pfam (PF08156) Pfam (PF01798) | Chaetomium thermophilum | |
| 21 | V, W (CE, CF) | snu13 | polymer | 127 | 13831.9 | 2 | UniProt (G0SGM0) Pfam (PF01248) | Chaetomium thermophilum | |
| 22 | X (CG) | Rrp9 | polymer | 630 | 69610.4 | 1 | UniProt (G0SG51) Pfam (PF00400) | Chaetomium thermophilum | |
| 23 | Y (CH) | RNA 3'-terminal phosphate cyclase-like protein | polymer | 411 | 43399.8 | 1 | UniProt (G0S0B1) Pfam (PF01137) Pfam (PF05189) | Chaetomium thermophilum | |
| 24 | Z (CI) | Bms1 | polymer | 1163 | 134172.3 | 1 | UniProt (G0S445) Pfam (PF01926) Pfam (PF08142) Pfam (PF04950) | Chaetomium thermophilum | |
| 25 | AA (CJ) | Imp3 | polymer | 183 | 21802.4 | 1 | UniProt (G0SDL4) Pfam (PF00163) Pfam (PF01479) | Chaetomium thermophilum | |
| 26 | BA (CK) | Putative U3 small nucleolar ribonucleoprotein | polymer | 297 | 34216.3 | 1 | UniProt (G0SE90) Pfam (PF04427) | Chaetomium thermophilum | |
| 27 | CA (CL) | Putative U3 small nucleolar ribonucleoprotein protein | polymer | 785 | 86082.1 | 1 | UniProt (G0S9I7) Pfam (PF04006) | Chaetomium thermophilum | |
| 28 | DA (CM) | Sof1 | polymer | 446 | 50869.8 | 1 | UniProt (G0RY94) Pfam (PF00400) Pfam (PF04158) | Chaetomium thermophilum | |
| 29 | EA, FA (CN, CO) | Emg1 | polymer | 252 | 27936.2 | 2 | UniProt (G0SAY9) Pfam (PF03587) | Chaetomium thermophilum | |
| 30 | GA (CP) | KRR1 small subunit processome component | polymer | 322 | 37500.8 | 1 | UniProt (G0S3V7) Pfam (PF17903) Pfam (PF21800) | Chaetomium thermophilum | KRR-R motif-containing protein 1 |
| 31 | HA (CQ) | Pre-rRNA-processing protein PNO1 | polymer | 259 | 28715.0 | 1 | UniProt (G0S3T2) Pfam (PF22891) | Chaetomium thermophilum | |
| 32 | IA, JA (CR, CS) | Kre33 | polymer | 1073 | 119795.1 | 2 | UniProt (G0S273) Pfam (PF08351) Pfam (PF05127) Pfam (PF13718) Pfam (PF13725) | Chaetomium thermophilum | |
| 33 | KA (CT) | Fcf2 | polymer | 203 | 22569.1 | 1 | UniProt (G0S4E3) Pfam (PF08698) | Chaetomium thermophilum | |
| 34 | LA (Ca) | 40S ribosomal protein S1 | polymer | 255 | 29245.2 | 1 | UniProt (G0S7T8) Pfam (PF01015) | Chaetomium thermophilum | |
| 35 | MA (Cc) | 40S ribosomal protein s5-like protein | polymer | 212 | 23679.2 | 1 | UniProt (G0S1Z0) Pfam (PF00177) | Chaetomium thermophilum | |
| 36 | NA (Ce) | 40S ribosomal protein S7 | polymer | 203 | 23084.7 | 1 | UniProt (G0S8C4) Pfam (PF01251) | Chaetomium thermophilum | |
| 37 | OA (Cg) | 40S ribosomal protein s9-like protein | polymer | 190 | 22029.8 | 1 | UniProt (G0S0Z4) Pfam (PF00163) Pfam (PF01479) | Chaetomium thermophilum | |
| 38 | PA (Ch) | 40S ribosomal protein S13-like protein | polymer | 151 | 16912.9 | 1 | UniProt (G0RZM9) Pfam (PF08069) Pfam (PF00312) | Chaetomium thermophilum | |
| 39 | QA (Ci) | 40S ribosomal protein S14-like protein | polymer | 150 | 16071.5 | 1 | UniProt (G0SFL1) Pfam (PF00411) | Chaetomium thermophilum | |
| 40 | RA (Cj) | 40S ribosomal protein S16-like protein | polymer | 143 | 15962.8 | 1 | UniProt (G0SBR7) Pfam (PF00380) | Chaetomium thermophilum | |
| 41 | SA (Cm) | 40S ribosomal protein S22-like protein | polymer | 130 | 14905.5 | 1 | UniProt (G0SHI0) Pfam (PF00410) | Chaetomium thermophilum | |
| 42 | TA (Cn) | 40S ribosomal protein s23-like protein | polymer | 145 | 15934.7 | 1 | UniProt (G0RY17) Pfam (PF00164) | Chaetomium thermophilum | |
| 43 | UA (Cp) | 40S ribosomal protein S28-like protein | polymer | 68 | 7742.0 | 1 | UniProt (G0S9M9) Pfam (PF01200) | Chaetomium thermophilum | |
| 44 | VA (CU) | Faf1 | polymer | 311 | 34576.6 | 1 | UniProt (G0S5F1) | Chaetomium thermophilum | |
| 45 | WA (C1) | 35S ribosomal RNA | polymer | 2352 | 758475.3 | 1 | Chaetomium thermophilum | ||
| 46 | XA (C2) | U3 snoRNA | polymer | 230 | 73966.5 | 1 | Chaetomium thermophilum | ||
| 47 | YA (UH) | Utp8 | polymer | 930 | 102421.1 | 1 | UniProt (P0CT47) | Chaetomium thermophilum | |
| 48 | DB, ZA (UE, UI) | Utp5" | polymer | 410 | 44663.4 | 2 | UniProt (G0RYX2) Pfam (PF04003) | Chaetomium thermophilum | |
| 49 | AB (US) | Noc4 | polymer | 549 | 63331.7 | 1 | UniProt (G0RZL4) Pfam (PF03914) | Chaetomium thermophilum | |
| 50 | BB (Cl) | Putative ribosomal protein | polymer | 156 | 17826.7 | 1 | UniProt (G0S6J7) Pfam (PF00416) | Chaetomium thermophilum | |
| 51 | CB (CX) | Enp1 | polymer | 480 | 54319.6 | 1 | UniProt (G0S5J4) Pfam (PF05291) | Chaetomium thermophilum | |
| 52 | EB (UP) | Utp16 | polymer | 364 | 40726.0 | 1 | UniProt (G0S612) Pfam (PF08297) | Chaetomium thermophilum | |
| 53 | FB (UX) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 54 | GB (CI) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) | |||
| 55 | HB (CI) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 3905101.1 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 612.9 | |
| All* | Total formula weight | 3905714.0 |
