6RFD
Cryo-EM structure of the N-terminal DC repeat (NDC) of NDC-NDC chimera (human sequence) bound to 14-protofilament GDP-microtubule
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, a | Tubulin alpha-1B chain | polymer | 432 | 48263.6 | 2 | UniProt (P81947) Pfam (PF00091) Pfam (PF03953) In PDB | Bos taurus (Bovine) | Alpha-tubulin ubiquitous,Tubulin K-alpha-1,Tubulin alpha-ubiquitous chain |
2 | B, b | Tubulin beta-2B chain | polymer | 429 | 48113.1 | 2 | UniProt (Q6B856) Pfam (PF00091) Pfam (PF03953) In PDB | Bos taurus (Bovine) | |
3 | N | Neuronal migration protein doublecortin | polymer | 99 | 11441.8 | 1 | UniProt (O43602) Pfam (PF03607) In PDB | Homo sapiens (Human) | Doublin,Lissencephalin-X,Lis-X |
4 | A, a | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 2 | Chemie (GTP) | |||
5 | A, a | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
6 | B, b | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) |
Sequence modifications
A, a: 1 - 441 (UniProt: P81947)
B, b: 1 - 429 (UniProt: Q6B856)
PDB | External Database | Details |
---|---|---|
- | Ser 38 | deletion |
- | Asp 39 | deletion |
- | Lys 40 | deletion |
- | Thr 41 | deletion |
- | Ile 42 | deletion |
- | Gly 43 | deletion |
- | Gly 44 | deletion |
- | Gly 45 | deletion |
- | Asp 46 | deletion |
PDB | External Database | Details |
---|---|---|
Ala 55 | Thr 55 | conflict |
Val 170 | Met 170 | conflict |
Ala 296 | Ser 296 | conflict |
Val 316 | Ile 316 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 204195.3 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1981.4 | |
All* | Total formula weight | 206176.7 |