6RDT
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1E, composite map
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 0 | ASA-10: Polytomella F-ATP synthase associated subunit 10 | polymer | 82 | 8731.9 | 1 | UniProt (by SIFTS) (A0A5H1ZR95) In PDB | Polytomella sp. Pringsheim 198.80 | |
2 | 1 | ATP synthase associated protein ASA1 | polymer | 618 | 68679.9 | 1 | UniProt (Q85JD5) In PDB | Polytomella sp. Pringsheim 198.80 | |
3 | 2 | ASA-2: Polytomella F-ATP synthase associated subunit 2 | polymer | 441 | 44842.1 | 1 | UniProt (by SIFTS) (D7P6B9) In PDB | Polytomella sp. Pringsheim 198.80 | |
4 | 3 | Mitochondrial F1F0 ATP synthase associated 32 kDa protein | polymer | 325 | 34850.4 | 1 | UniProt (K0J903) In PDB | Polytomella sp. Pringsheim 198.80 | |
5 | 4 | Mitochondrial ATP synthase associated protein ASA4 | polymer | 294 | 31275.1 | 1 | UniProt (D7NIZ2) In PDB | Polytomella sp. Pringsheim 198.80 | |
6 | 5 | Mitochondrial F1F0 ATP synthase associated 14 kDa protein | polymer | 123 | 14004.4 | 1 | UniProt (A0A024FSR7) Pfam (PF22804) In PDB | Polytomella sp. Pringsheim 198.80 | |
7 | 6 | Mitochondrial ATP synthase subunit ASA6 | polymer | 151 | 15904.3 | 1 | UniProt (D7P897) In PDB | Polytomella sp. Pringsheim 198.80 | |
8 | 7 | Mitochondrial ATP synthase associated protein ASA7 | polymer | 190 | 20553.2 | 1 | UniProt (D8V7I2) In PDB | Polytomella sp. Pringsheim 198.80 | |
9 | 8 | Mitochondrial ATP synthase subunit ASA8 | polymer | 89 | 9883.4 | 1 | UniProt (D8V7I7) In PDB | Polytomella sp. Pringsheim 198.80 | |
10 | 9 | ASA-9: Polytomella F-ATP synthase associated subunit 9 | polymer | 97 | 11001.7 | 1 | UniProt (by SIFTS) (A0A5H1ZR73) In PDB | Polytomella sp. Pringsheim 198.80 | |
11 | A, B, C, D, E... | Mitochondrial ATP synthase subunit c | polymer | 127 | 12664.0 | 10 | UniProt (D7P7X5) Pfam (PF00137) In PDB | Polytomella sp. Pringsheim 198.80 | |
12 | M | Mitochondrial ATP synthase subunit 6 | polymer | 327 | 34802.3 | 1 | UniProt (H8PGG3) Pfam (PF00119) In PDB | Polytomella sp. Pringsheim 198.80 | |
13 | P | Mitochondrial ATP synthase subunit OSCP | polymer | 229 | 25530.8 | 1 | UniProt (D8V7I1) Pfam (PF00213) In PDB | Polytomella sp. Pringsheim 198.80 | |
14 | Q | epsilon: Polytomella F-ATP synthase epsilon subunit | polymer | 74 | 8205.5 | 1 | Pfam (PF04627) UniProt (by SIFTS) (A0A5H1ZR74) In PDB | Polytomella sp. Pringsheim 198.80 | |
15 | R | Mitochondrial ATP synthase subunit delta | polymer | 199 | 20880.5 | 1 | UniProt (D7P7X6) Pfam (PF02823) In PDB | Polytomella sp. Pringsheim 198.80 | |
16 | S | ATP synthase gamma chain, mitochondrial | polymer | 317 | 34639.6 | 1 | UniProt (Q4LDE7) Pfam (PF00231) In PDB | Polytomella sp. Pringsheim 198.80 | |
17 | T, U, V | ATP synthase subunit alpha | polymer | 562 | 60766.2 | 3 | UniProt (A0ZW40) Pfam (PF00306) Pfam (PF02874) Pfam (PF00006) In PDB | Polytomella sp. Pringsheim 198.80 | |
18 | X, Y, Z | ATP synthase subunit beta | polymer | 574 | 61939.1 | 3 | UniProt (A0ZW41) Pfam (PF02874) Pfam (PF00006) Pfam (PF22919) In PDB | Polytomella sp. Pringsheim 198.80 | |
19 | M | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
20 | T, U, V | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 3 | Chemie (ATP) | |||
21 | T, U, V, X, Y | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
22 | X, Y | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 2 | Chemie (ADP) |
Sequence modifications
T, U, V: 1 - 562 (UniProt: A0ZW40)
X, Y, Z: 1 - 574 (UniProt: A0ZW41)
PDB | External Database | Details |
---|---|---|
Arg 266 | Lys 266 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 350 | Gly 350 | conflict |
Leu 387 | Arg 387 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 31 |
Total formula weight | 878540.8 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 2562.9 | |
All* | Total formula weight | 881103.7 |