6RDI
Cryo-EM structure of Polytomella F-ATP synthase, Rotary substate 1A, monomer-masked refinement
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | ASA-10: Polytomella F-ATP synthase associated subunit 10 | polymer | 82 | 8731.9 | 1 | UniProt (by SIFTS) (A0A5H1ZR95) | Polytomella sp. Pringsheim 198.80 | |
| 2 | B (1) | ATP synthase associated protein ASA1 | polymer | 618 | 68679.9 | 1 | UniProt (Q85JD5) | Polytomella sp. Pringsheim 198.80 | |
| 3 | C (2) | ASA-2: Polytomella F-ATP synthase associated subunit 2 | polymer | 441 | 44842.1 | 1 | UniProt (by SIFTS) (D7P6B9) | Polytomella sp. Pringsheim 198.80 | |
| 4 | D (3) | Mitochondrial F1F0 ATP synthase associated 32 kDa protein | polymer | 325 | 34850.4 | 1 | UniProt (K0J903) | Polytomella sp. Pringsheim 198.80 | |
| 5 | E (4) | Mitochondrial ATP synthase associated protein ASA4 | polymer | 294 | 31275.1 | 1 | UniProt (D7NIZ2) | Polytomella sp. Pringsheim 198.80 | |
| 6 | F (5) | Mitochondrial F1F0 ATP synthase associated 14 kDa protein | polymer | 123 | 14004.4 | 1 | UniProt (A0A024FSR7) Pfam (PF22804) | Polytomella sp. Pringsheim 198.80 | |
| 7 | G (6) | Mitochondrial ATP synthase subunit ASA6 | polymer | 151 | 15904.3 | 1 | UniProt (D7P897) | Polytomella sp. Pringsheim 198.80 | |
| 8 | H (7) | Mitochondrial ATP synthase associated protein ASA7 | polymer | 190 | 20553.2 | 1 | UniProt (D8V7I2) | Polytomella sp. Pringsheim 198.80 | |
| 9 | I (8) | Mitochondrial ATP synthase subunit ASA8 | polymer | 89 | 9883.4 | 1 | UniProt (D8V7I7) | Polytomella sp. Pringsheim 198.80 | |
| 10 | J (9) | ASA-9: Polytomella F-ATP synthase associated subunit 9 | polymer | 97 | 11001.7 | 1 | UniProt (by SIFTS) (A0A5H1ZR73) | Polytomella sp. Pringsheim 198.80 | |
| 11 | K, L, M, N, O... (A, B, C, D, E...) | Mitochondrial ATP synthase subunit c | polymer | 127 | 12664.0 | 10 | UniProt (D7P7X5) Pfam (PF00137) | Polytomella sp. Pringsheim 198.80 | |
| 12 | U (M) | Mitochondrial ATP synthase subunit 6 | polymer | 327 | 34802.3 | 1 | UniProt (H8PGG3) Pfam (PF00119) | Polytomella sp. Pringsheim 198.80 | |
| 13 | V (P) | Mitochondrial ATP synthase subunit OSCP | polymer | 229 | 25530.8 | 1 | UniProt (D8V7I1) Pfam (PF00213) | Polytomella sp. Pringsheim 198.80 | |
| 14 | W (Q) | epsilon: Polytomella F-ATP synthase epsilon subunit | polymer | 74 | 8205.5 | 1 | Pfam (PF04627) UniProt (by SIFTS) (A0A5H1ZR74) | Polytomella sp. Pringsheim 198.80 | |
| 15 | X (R) | Mitochondrial ATP synthase subunit delta | polymer | 199 | 20880.5 | 1 | UniProt (D7P7X6) Pfam (PF02823) | Polytomella sp. Pringsheim 198.80 | |
| 16 | Y (S) | ATP synthase gamma chain, mitochondrial | polymer | 317 | 34639.6 | 1 | UniProt (Q4LDE7) Pfam (PF00231) | Polytomella sp. Pringsheim 198.80 | |
| 17 | AA, BA, Z (T, U, V) | ATP synthase subunit alpha | polymer | 562 | 60766.2 | 3 | UniProt (A0ZW40) Pfam (PF00306) Pfam (PF02874) Pfam (PF00006) | Polytomella sp. Pringsheim 198.80 | |
| 18 | CA, DA, EA (X, Y, Z) | ATP synthase subunit beta | polymer | 574 | 61939.1 | 3 | UniProt (A0ZW41) Pfam (PF02874) Pfam (PF00006) Pfam (PF22919) | Polytomella sp. Pringsheim 198.80 | |
| 19 | FA (M) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 20 | GA, IA, KA (T, U, V) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 3 | Chemie (ATP) | |||
| 21 | HA, JA, LA, NA, PA (T, U, V, X, Y) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 22 | MA, OA (X, Y) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 2 | Chemie (ADP) |
Sequence modifications
T, U, V: 1 - 562 (UniProt: A0ZW40)
X, Y, Z: 1 - 574 (UniProt: A0ZW41)
| PDB | External Database | Details |
|---|---|---|
| Arg 266 | Lys 266 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 350 | Gly 350 | conflict |
| Leu 387 | Arg 387 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 878540.8 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 2562.9 | |
| All* | Total formula weight | 881103.7 |
