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6R86

Yeast Vms1-60S ribosomal subunit complex (post-state)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1RProtein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1,Protein VMS1polymer47553690.71UniProt (Q04311)
Pfam (PF18826)
In PDB
Saccharomyces cerevisiae (Baker's yeast)VCP/CDC48-associated mitochondrial stress-responsive protein 1,VCP/CDC48-associated mitochondrial stress-responsive protein 1
2XEukaryotic translation initiation factor 6polymer22424156.21UniProt (Q12522)
Pfam (PF01912)
In PDB
Saccharomyces cerevisiae (Baker's yeast)eIF-6
3i60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
4J60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
5j60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
6K60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
7k60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
8760S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
9l60S ribosomal protein L37-Apolymer879746.21UniProt (P49166)
Pfam (PF01907)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
10M60S ribosomal protein L11-Bpolymer16919266.11UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
11m60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
12N60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
13n60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
14O60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
15oUbiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
In PDB
Saccharomyces cerevisiae (Baker's yeast)
16p60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
17Q60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
18560S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
19S60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
20s60S ribosomal protein L10polymer22025279.31UniProt (P41805)
Pfam (PF00252)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
21T60S ribosomal protein L19-Apolymer15217447.41UniProt (P0CX82)
Pfam (PF01280)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
22U60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
23V60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
24W60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
25P60S ribosomal protein L12-Apolymer15516679.31UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L15,Large ribosomal subunit protein uL11-A,YL23
26r60S acidic ribosomal protein P0polymer19721715.01UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
27x60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
2835S ribosomal RNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae
29Y60S ribosomal protein L24-Apolymer627271.61UniProt (P04449)
Pfam (PF01246)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
3045.8S ribosomal RNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae
31Z60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
32a60S ribosomal protein L26-Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
33b60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
34C60S ribosomal protein L42-Apolymer10512115.51UniProt (P0CX27)
Pfam (PF00935)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
35c60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
36D60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
37d60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
38E60S ribosomal protein L2-Apolymer25227217.31UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
39e60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
40F60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
41f60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
42G60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF14374)
Pfam (PF00573)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
43g60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
44H60S ribosomal protein L5polymer29633633.61UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
45h60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
46I60S ribosomal protein L6-Apolymer17519869.41UniProt (Q02326)
Pfam (PF01159)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
47L60S ribosomal protein L1-Apolymer20422974.01UniProt (P0CX43)
Pfam (PF00687)
In PDB
Saccharomyces cerevisiae (Baker's yeast)L10a,Large ribosomal subunit protein uL1-A
48125S ribosomal RNApolymer32601053756.41Saccharomyces cerevisiae
49RZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
R: 13 - 105 (UniProt: Q04311)
R: 113 - 173 (PDB: 6R86)
R: 188 - 529 (UniProt: Q04311)
R: 535 - 545 (PDB: 6R86)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains48
Total formula weight1982954.3
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight1983019.7
*Water molecules are not included.

217705

PDB entries from 2024-03-27

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