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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6R84

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AABC transporter ATP-binding protein ARB1polymer51958604.41UniProt (P40024)
Pfam (PF00005)
Pfam (PF12848)
In PDB		Saccharomyces cerevisiae (Baker's yeast)ATP-binding cassette protein involved in ribosome biogenesis 1
2RProtein VMS1,Vms1,Protein VMS1,Vms1polymer43348653.21UniProt (Q04311)
Pfam (PF18826)
In PDB		Saccharomyces cerevisiae (Baker's yeast)VCP/CDC48-associated mitochondrial stress-responsive protein 1,VCP/CDC48-associated mitochondrial stress-responsive protein 1
3XEukaryotic translation initiation factor 6polymer22424156.21UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae (Baker's yeast)eIF-6
4i60S ribosomal protein L34-Apolymer11212608.81UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
5J60S ribosomal protein L7-Apolymer22225240.41UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
6j60S ribosomal protein L35-Apolymer11913811.41UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
7K60S ribosomal protein L8-Apolymer23325815.01UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
8k60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
9760S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
10l60S ribosomal protein L37-Apolymer879746.21UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
11M60S ribosomal protein L11-Bpolymer16919266.11UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L16,Large ribosomal subunit protein uL5-B,RP39,YL22
12m60S ribosomal protein L38polymer778714.41UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
13N60S ribosomal protein L13-Apolymer19321885.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
14n60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
15O60S ribosomal protein L14-Apolymer13614976.81UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
16oUbiquitin-60S ribosomal protein L40polymer526032.31UniProt (P0CH08)
Pfam (PF01020)
In PDB		Saccharomyces cerevisiae (Baker's yeast)
17p60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
18Q60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
19560S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
20S60S ribosomal protein L18-Apolymer18520478.11UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
21s60S ribosomal protein L10polymer22025279.31UniProt (P41805)
Pfam (PF00252)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
22T60S ribosomal protein L19-Apolymer15217447.41UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
23U60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
24V60S ribosomal protein L21-Apolymer15918148.11UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
25W60S ribosomal protein L22-Apolymer10011263.91UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
26P60S ribosomal protein L12-Apolymer15516679.31UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L15,Large ribosomal subunit protein uL11-A,YL23
27r60S acidic ribosomal protein P0polymer19721715.01UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae (Baker's yeast)A0,L10e,Large ribosomal subunit protein uL10
28x60S ribosomal protein L23-Apolymer13614362.81UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
2935S rRNApolymer12138951.11GenBank (1329886537)Saccharomyces cerevisiae
30Y60S ribosomal protein L24-Apolymer627271.61UniProt (P04449)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
3145.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae
32Z60S ribosomal protein L25polymer12113771.21UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
33a60S ribosomal protein L26-Apolymer12614134.61UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
34BtRNA-Alapolymer7624502.51Saccharomyces cerevisiae
35b60S ribosomal protein L27-Apolymer13515437.21UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
36C60S ribosomal protein L42-Apolymer10512115.51UniProt (P0CX27)
Pfam (PF00935)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
37c60S ribosomal protein L28polymer14816630.51UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
38D60S ribosomal protein L43-Apolymer919981.81UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
39d60S ribosomal protein L29polymer586560.71UniProt (P05747)
Pfam (PF01779)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL29,YL43
40E60S ribosomal protein L2-Apolymer25227217.31UniProt (P0CX45)
Pfam (PF03947)
Pfam (PF00181)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
41e60S ribosomal protein L30polymer9710558.31UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
42F60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
43f60S ribosomal protein L31-Apolymer10912649.81UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
44G60S ribosomal protein L4-Apolymer36139027.91UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
45g60S ribosomal protein L32polymer12714478.11UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
46H60S ribosomal protein L5polymer29633633.61UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
47h60S ribosomal protein L33-Apolymer10612045.91UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
48I60S ribosomal protein L6-Apolymer17519869.41UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
49L60S ribosomal protein L1-Apolymer20422974.01UniProt (P0CX43)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae (Baker's yeast)L10a,Large ribosomal subunit protein uL1-A
50125S rRNApolymer33161071848.41Saccharomyces cerevisiae
51RZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
R: 13 - 105 (UniProt: Q04311)
PDBExternal DatabaseDetails
-Phe 36deletion
-Asp 37deletion
-Ser 38deletion
-Thr 39deletion
-Leu 40deletion
-Arg 41deletion
-Glu 42deletion
-Val 43deletion
-Glu 44deletion
-Val 45deletion
-Glu 46deletion
-Lys 47deletion
-Thr 48deletion
-Ser 49deletion
-Asp 50deletion
-Asn 51deletion
-Asp 52deletion
-Arg 53deletion
-Asn 54deletion
-Lys 55deletion
-Glu 56deletion
-Ser 57deletion
-Gly 58deletion
-Asp 59deletion
-Leu 60deletion
-Gln 61deletion
-Ile 62deletion
-Ala 63deletion
-Arg 64deletion
-Lys 65deletion
-Lys 66deletion
-Val 67deletion
-Thr 68deletion
-Ser 69deletion
-Asn 70deletion
-Val 71deletion
-Met 72deletion
-Arg 73deletion
-Phe 81deletion
-Asp 82deletion
-Ser 83deletion
-Arg 84deletion
-Asn 85deletion
-Glu 86deletion
-Gln 87deletion
-Lys 88deletion
-Ala 89deletion
R: 113 - 173 (PDB: 6R84)
R: 188 - 529 (UniProt: Q04311)
PDBExternal DatabaseDetails
Ser 187-linker
R: 535 - 549 (PDB: 6R84)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2079115.7
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2079181.1
*Water molecules are not included.

218500

PDB entries from 2024-04-17

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