6R2L
NYBR1-A2-SLSKILDTV
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | HLA class I histocompatibility antigen, A-2 alpha chain | polymer | 276 | 31951.3 | 1 | UniProt (P01892) Pfam (PF00129) Pfam (PF07654) UniProt (by SIFTS) (P04439) | Homo sapiens (Human) | MHC class I antigen A*2 |
| 2 | B (B) | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) | Homo sapiens (Human) | |
| 3 | C (C) | SER-LEU-SER-LYS-ILE-LEU-ASP-THR-VAL | polymer | 9 | 976.1 | 1 | UniProt (by SIFTS) (Q9BXX3) | Homo sapiens | |
| 4 | D (D) | T cell receptor alpha variable 22,Human nkt tcr alpha chain | polymer | 194 | 21676.9 | 1 | UniProt (A0A0B4J277) UniProt (K7N5M3) Pfam (PF07686) Pfam (PF09291) | Homo sapiens (Human) | Human nkt tcr beta chain |
| 5 | E (E) | T cell receptor beta variable 11-2,Human nkt tcr beta chain | polymer | 247 | 27893.3 | 1 | UniProt (A0A584) UniProt (K7N5M4) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | |
| 6 | F (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 7 | G, H (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 8 | I, J, S (A, E) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 9 | K, L, M, N, P... (A, B, D, E) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 10 | O (B) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
| 11 | U, V, W, X, Y (A, B, C, D, E) | water | water | 18.0 | 380 | Chemie (HOH) |
Sequence modifications
B: 1 - 99 (UniProt: P61769)
D: 2 - 90 (UniProt: A0A0B4J277)
D: 114 - 194 (UniProt: K7N5M3)
E: 3 - 96 (UniProt: A0A584)
E: 107 - 249 (UniProt: K7N5M4)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Trp 54 | Thr 73 | conflict |
| Glu 57 | Asn 76 | conflict |
| Gly 91 | - | linker |
| Gly 92 | - | linker |
| Asn 93 | - | linker |
| Asp 94 | - | linker |
| Trp 95 | - | linker |
| Asn 96 | - | linker |
| Thr 97 | - | linker |
| Asp 98 | - | linker |
| Lys 99 | - | linker |
| Leu 100 | - | linker |
| Ile 101 | - | linker |
| Phe 102 | - | linker |
| Gly 103 | - | linker |
| Thr 104 | - | linker |
| Gly 105 | - | linker |
| Thr 106 | - | linker |
| Arg 107 | - | linker |
| Leu 108 | - | linker |
| Gln 109 | - | linker |
| Val 110 | - | linker |
| Phe 111 | - | linker |
| Pro 112 | - | linker |
| Asn 113 | - | linker |
E: 3 - 96 (UniProt: A0A584)
| PDB | External Database | Details |
|---|---|---|
| Phe 28 | Ser 46 | conflict |
| Ser 29 | Gly 47 | conflict |
| Pro 31 | Ala 49 | conflict |
| Gly 51 | Gln 69 | conflict |
| Gly 52 | Asn 70 | conflict |
| Trp 53 | Asn 71 | conflict |
| Pro 54 | Gly 72 | conflict |
| Gly 55 | Val 73 | conflict |
| Leu 90 | Val 108 | conflict |
| Pro 97 | - | linker |
| Leu 98 | - | linker |
| Asp 99 | - | linker |
| Val 100 | - | linker |
| Ser 101 | - | linker |
| Ile 102 | - | linker |
| Ser 103 | - | linker |
| Ser 104 | - | linker |
| Tyr 105 | - | linker |
| Asn 106 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Phe 109 | Tyr 109 | conflict |
| Leu 119 | Thr 119 | conflict |
| Asp 208 | Asn 208 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 94377.0 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1513.3 | |
| All* | Total formula weight | 95890.4 |
