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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6QDW

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L28polymer789027.61UniProt (A0A140N3L9)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli (strain B / BL21-DE3)
2150S ribosomal protein L29polymer637286.51UniProt (A0A140N7F5)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli (strain B / BL21-DE3)
3250S ribosomal protein L30polymer596554.81UniProt (A0A140N7G4)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli (strain B / BL21-DE3)
4350S ribosomal protein L32polymer576463.41UniProt (A0A140NAZ2)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli (strain B / BL21-DE3)
5450S ribosomal protein L33polymer556388.61UniProt (A0A140N5Z7)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli (strain B / BL21-DE3)
6650S ribosomal protein L34polymer465397.51UniProt (A0A140NHV0)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli (strain B / BL21-DE3)
7750S ribosomal protein L35polymer657313.01UniProt (A0A140N9E3)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli (strain B / BL21-DE3)
8850S ribosomal protein L36polymer384377.41UniProt (A0A140N5M6)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli (strain B / BL21-DE3)
9a5S rRNApolymer12038790.11GenBank (1706539273)Escherichia coli (strain B / BL21-DE3)
10b23S rRNApolymer2906942342.91GenBank (296142109)Escherichia coli BL21(DE3)
11c50S ribosomal protein L2polymer27329923.61UniProt (A0A140N7J1)
Pfam (PF03947)
Pfam (PF00181)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli (strain B / BL21-DE3)
12d50S ribosomal protein L3polymer20922277.51UniProt (A0A140N3G7)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli (strain B / BL21-DE3)
13e50S ribosomal protein L4polymer20122121.61UniProt (A0A140N5K8)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli (strain B / BL21-DE3)
14f50S ribosomal protein L5polymer17920333.61UniProt (A0A140N5A3)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli (strain B / BL21-DE3)
15g50S ribosomal protein L6polymer17718932.81UniProt (A0A140N2T1)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli (strain B / BL21-DE3)
16h50S ribosomal protein L9polymer14915789.01UniProt (A0A140NDV1)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli (strain B / BL21-DE3)
17j50S ribosomal protein L13polymer14216050.61UniProt (A0A140N598)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli (strain B / BL21-DE3)
18k50S ribosomal protein L14polymer12313565.11UniProt (A0A140N3H4)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli (strain B / BL21-DE3)
19l50S ribosomal protein L15polymer14414994.41UniProt (A0A140N711)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli (strain B / BL21-DE3)
20m50S ribosomal protein L16polymer13615312.31UniProt (A0A140N6Z2)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli (strain B / BL21-DE3)
21n50S ribosomal protein L17polymer12714393.71UniProt (A0A140N4M0)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli (strain B / BL21-DE3)
22o50S ribosomal protein L18polymer11712794.71UniProt (A0A140N4L0)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli (strain B / BL21-DE3)
23p50S ribosomal protein L19polymer11513159.31UniProt (A0A140N6T7)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli (strain B / BL21-DE3)
24q50S ribosomal protein L20polymer11813528.01UniProt (A0A140NBS1)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli (strain B / BL21-DE3)
25r50S ribosomal protein L21polymer10311586.41UniProt (A0A140N5D7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli (strain B / BL21-DE3)
26s50S ribosomal protein L22polymer11012253.41UniProt (A0A140N2S3)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli (strain B / BL21-DE3)
27t50S ribosomal protein L23polymer10011222.21UniProt (C6EGE8)
Pfam (PF00276)
In PDB		Escherichia coli (strain B / BL21-DE3)
28u50S ribosomal protein L24polymer10411339.31UniProt (A0A140N5L7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli (strain B / BL21-DE3)
29vglycine-tRNA glyTpolymer7523935.11GenBank (1730024484)Escherichia coli (strain B / BL21-DE3)
30w50S ribosomal protein L25polymer9410713.51UniProt (A0A140N846)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli (strain B / BL21-DE3)
31y50S ribosomal protein L27polymer859146.51UniProt (A0A140N340)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli (strain B / BL21-DE3)
32zGamma-crystallin Bpolymer617158.01UniProt (P02526)
Pfam (PF00030)
In PDB		Bos taurus (Bovine)Gamma-B-crystallin,Gamma-crystallin II
Sequence modifications
z: -20 - 17 (UniProt: P02526)
PDBExternal DatabaseDetails
Met -32-initiating methionine
Gly -31-expression tag
His -30-expression tag
His -29-expression tag
His -28-expression tag
His -27-expression tag
His -26-expression tag
His -25-expression tag
His -24-expression tag
His -23-expression tag
His -22-expression tag
His -21-expression tag
Phe 13Asn 34conflict
Thr 15Ile 36conflict
Pro 16Arg 37conflict
Trp 18-expression tag
Ile 19-expression tag
Ser 20-expression tag
Gln 21-expression tag
Ala 22-expression tag
Gln 23-expression tag
Gly 24-expression tag
Ile 25-expression tag
Arg 26-expression tag
Ala 27-expression tag
Gly 28-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains32
Total formula weight1374472.2
All*Total formula weight1374472.2
*Water molecules are not included.

222926

PDB entries from 2024-07-24

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