6QD8
EM structure of a EBOV-GP bound to 4M0368 neutralizing antibody
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | Z, Y, L | Light chain | polymer | 214 | 23411.9 | 3 | Homo sapiens | ||
2 | A, C, E | Envelope glycoprotein,Virion spike glycoprotein,EBOV-GP1 | polymer | 322 | 34887.6 | 3 | UniProt (Q05320) Pfam (PF01611) In PDB | Ebola virus | GP1,2,GP |
3 | B, F, D | Envelope glycoprotein | polymer | 168 | 18989.4 | 3 | UniProt (Q05320) Pfam (PF22307) In PDB | Ebola virus | GP1,2,GP |
4 | H, W, Q | Heavy chain | polymer | 219 | 23091.9 | 3 | Homo sapiens | ||
5 | G, I, J | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
6 | B, F, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
A, C, E: 32 - 309 (UniProt: Q05320)
A, C, E: 310 - 508 (PDB: 6QD8)
B, F, D: 502 - 632 (UniProt: Q05320)
PDB | External Database | Details |
---|---|---|
Gly 29 | - | expression tag |
Ser 30 | - | expression tag |
Arg 31 | - | expression tag |
Ala 42 | Thr 42 | conflict |
B, F, D: 502 - 632 (UniProt: Q05320)
PDB | External Database | Details |
---|---|---|
Gly 633 | - | expression tag |
Ser 634 | - | expression tag |
Gly 635 | - | expression tag |
Tyr 636 | - | expression tag |
Ile 637 | - | expression tag |
Pro 638 | - | expression tag |
Glu 639 | - | expression tag |
Ala 640 | - | expression tag |
Pro 641 | - | expression tag |
Arg 642 | - | expression tag |
Asp 643 | - | expression tag |
Gly 644 | - | expression tag |
Gln 645 | - | expression tag |
Ala 646 | - | expression tag |
Tyr 647 | - | expression tag |
Val 648 | - | expression tag |
Arg 649 | - | expression tag |
Lys 650 | - | expression tag |
Asp 651 | - | expression tag |
Gly 652 | - | expression tag |
Glu 653 | - | expression tag |
Trp 654 | - | expression tag |
Val 655 | - | expression tag |
Leu 656 | - | expression tag |
Leu 657 | - | expression tag |
Ser 658 | - | expression tag |
Thr 659 | - | expression tag |
Phe 660 | - | expression tag |
Leu 661 | - | expression tag |
Gly 662 | - | expression tag |
Thr 663 | - | expression tag |
His 664 | - | expression tag |
His 665 | - | expression tag |
His 666 | - | expression tag |
His 667 | - | expression tag |
His 668 | - | expression tag |
His 669 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 301142.4 | |
Branched | Number of molecules | 3 |
Total formula weight | 1759.6 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 663.6 | |
All* | Total formula weight | 303565.6 |