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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6Q9A

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S ribosomal RNApolymer2903941526.41Escherichia coli
2216S ribosomal RNApolymer1534497406.01Escherichia coli
335S ribosomal RNApolymer12038790.11Escherichia coli
46Nascent peptidepolymer231652.81Escherichia coli
57P-site tRNApolymer7624476.51Escherichia coli
6B50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
7C50S ribosomal protein L3polymer20722075.31UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
8D50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliLarge ribosomal subunit protein uL4
9E50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliLarge ribosomal subunit protein uL5
10F50S ribosomal protein L6polymer17518672.41UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliLarge ribosomal subunit protein uL6
11G50S ribosomal protein L9polymer14815659.91UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliLarge ribosomal subunit protein bL9
12H50S ribosomal protein L10polymer13013981.11UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
13I50S ribosomal protein L11polymer13514090.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
14J50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliLarge ribosomal subunit protein uL13
15K50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliLarge ribosomal subunit protein uL14
16L50S ribosomal protein L15polymer14314879.41UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliLarge ribosomal subunit protein uL15
17M50S ribosomal protein L16polymer13515181.11UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
18N50S ribosomal protein L17polymer11913592.81UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliLarge ribosomal subunit protein bL17
19O50S ribosomal protein L18polymer11512548.41UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliLarge ribosomal subunit protein uL18
20P50S ribosomal protein L19polymer11312914.01UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliLarge ribosomal subunit protein bL19
21Q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliLarge ribosomal subunit protein bL20
22R50S ribosomal protein L21polymer10211515.31UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliLarge ribosomal subunit protein bL21
23S50S ribosomal protein L22polymer10912096.21UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
24T50S ribosomal protein L23polymer9410661.61UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliLarge ribosomal subunit protein uL23
25U50S ribosomal protein L24polymer10111007.81UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliLarge ribosomal subunit protein uL24
26V50S ribosomal protein L25polymer9310642.41UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliLarge ribosomal subunit protein bL25
27W50S ribosomal protein L27polymer758146.41UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
28X50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliLarge ribosomal subunit protein bL28
29Y50S ribosomal protein L29polymer627155.31UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliLarge ribosomal subunit protein uL29
30Z50S ribosomal protein L30polymer566223.41UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliLarge ribosomal subunit protein uL30
31a50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
32b50S ribosomal protein L32polymer556203.11UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coliLarge ribosomal subunit protein bL32
33c50S ribosomal protein L33polymer515928.01UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliLarge ribosomal subunit protein bL33
34d50S ribosomal protein L34polymer455268.31UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliLarge ribosomal subunit protein bL34
35e50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
36f50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
37g30S ribosomal protein S2polymer22525072.91UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coliSmall ribosomal subunit protein uS2
38h30S ribosomal protein S3polymer20823249.01UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coliSmall ribosomal subunit protein uS3
39i30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coliSmall ribosomal subunit protein uS4
40j30S ribosomal protein S5polymer15616475.01UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coliSmall ribosomal subunit protein uS5
41k30S ribosomal protein S6polymer10412126.01UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
42l30S ribosomal protein S7polymer15216999.71UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
43m30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coliSmall ribosomal subunit protein uS8
44n30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coliSmall ribosomal subunit protein uS9
45o30S ribosomal protein S10polymer9911254.01UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coliSmall ribosomal subunit protein uS10
46p30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
47q30S ribosomal protein S12polymer12213612.01UniProt (F5NAB8)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
48r30S ribosomal protein S13polymer11612868.11UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coliSmall ribosomal subunit protein uS13
49s30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coliSmall ribosomal subunit protein uS14
50t30S ribosomal protein S15polymer8710072.51UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coliSmall ribosomal subunit protein uS15
51u30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coliSmall ribosomal subunit protein bS16
52v30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coliSmall ribosomal subunit protein uS17
53w30S ribosomal protein S18polymer667734.91UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coliSmall ribosomal subunit protein bS18
54x30S ribosomal protein S19polymer839421.01UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coliSmall ribosomal subunit protein uS19
55y30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coliSmall ribosomal subunit protein bS20
56z30S ribosomal protein S21polymer708392.81UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
575SsrA-binding proteinpolymer11813350.41UniProt (A0A0K4SFK5)
Pfam (PF01668)
UniProt (by SIFTS) (P0A832)
In PDB		Escherichia coliSmall protein B
584tmRNApolymer363117198.31GenBank (1453173753)Escherichia coli
591, 2, i, s, 3...MAGNESIUM IONnon-polymer24.3437Chemie (MG)
60f, aZINC IONnon-polymer65.42Chemie (ZN)
61waterwater18.02Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2296758.0
Non-Polymers*Number of molecules439
Total formula weight10752.1
All*Total formula weight2307510.1
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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