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6Q2Y

Crystal structure of NDM-1 beta-lactamase in complex with broad spectrum boronic inhibitor cpd3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase type 2polymer24425860.12UniProt (C7C422)Klebsiella pneumoniaeB2 metallo-beta-lactamase,Beta-lactamase type II,Metallo-beta-lactamase NDM-1,Metallo-beta-lactamase type II,New Delhi metallo-beta-lactamase-1,NDM-1
2C, D, H, I
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E, F, J, K
(A, B)
CALCIUM IONnon-polymer40.14Chemie (CA)
4G, L
(A, B)
[5-(aminomethyl)-1-benzothiophen-2-yl]-tris(oxidanyl)boranuidenon-polymer224.12Chemie (HCQ)
5M
(B)
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDnon-polymer238.31Chemie (EPE)
6N, O
(A, B)
waterwater18.0286Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51720.3
Non-Polymers*Number of molecules11
Total formula weight1108.4
All*Total formula weight52828.6
*Water molecules are not included.

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PDB entries from 2026-02-04

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