6Q05
MERS-CoV S structure in complex with sialyl-lewisX
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1359 | 149172.1 | 3 | UniProt (K0BRG7) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Human betacoronavirus 2c EMC/2012 | S glycoprotein,E2,Peplomer protein |
2 | D, d, H, O, S... | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 6 | In PDB GlyTouCan (G81315DD) | |||
3 | a, E, e, f, I... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
4 | b, F, Q | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 3 | In PDB GlyTouCan (G89619KY) | |||
5 | c, G, R | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
6 | g, h, K, L, V... | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 6 | In PDB GlyTouCan (G22768VO) | |||
7 | j, N, Y | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 820.7 | 3 | In PDB BIRD (PRD_900121) GlyTouCan (G00054MO) | Sialyl-Lewis X antigen, beta anomer | ||
8 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) | |||
9 | C, A, B | FOLIC ACID | non-polymer | 441.4 | 3 | Chemie (FOL) | |||
10 | water | water | 18.0 | 195 | Chemie (HOH) |
Sequence modifications
A, B, C: 19 - 1294 (UniProt: K0BRG7)
PDB | External Database | Details |
---|---|---|
Met -13 | - | initiating methionine |
Gly -12 | - | expression tag |
Ile -11 | - | expression tag |
Leu -10 | - | expression tag |
Pro -9 | - | expression tag |
Ser -8 | - | expression tag |
Pro -7 | - | expression tag |
Gly -6 | - | expression tag |
Met -5 | - | expression tag |
Pro -4 | - | expression tag |
Ala -3 | - | expression tag |
Leu -2 | - | expression tag |
Leu -1 | - | expression tag |
Ser 0 | - | expression tag |
Leu 1 | - | expression tag |
Val 2 | - | expression tag |
Ser 3 | - | expression tag |
Leu 4 | - | expression tag |
Leu 5 | - | expression tag |
Ser 6 | - | expression tag |
Val 7 | - | expression tag |
Leu 8 | - | expression tag |
Leu 9 | - | expression tag |
Met 10 | - | expression tag |
Gly 11 | - | expression tag |
Cys 12 | - | expression tag |
Val 13 | - | expression tag |
Ala 14 | - | expression tag |
Glu 15 | - | expression tag |
Thr 16 | - | expression tag |
Gly 17 | - | expression tag |
Thr 18 | - | expression tag |
Ala 748 | Arg 748 | engineered mutation |
Gly 751 | Arg 751 | engineered mutation |
Pro 1060 | Val 1060 | engineered mutation |
Pro 1061 | Leu 1061 | engineered mutation |
Gly 1295 | - | expression tag |
Ser 1296 | - | expression tag |
Gly 1297 | - | expression tag |
Arg 1298 | - | expression tag |
Glu 1299 | - | expression tag |
Asn 1300 | - | expression tag |
Leu 1301 | - | expression tag |
Tyr 1302 | - | expression tag |
Phe 1303 | - | expression tag |
Gln 1304 | - | expression tag |
Gly 1305 | - | expression tag |
Gly 1306 | - | expression tag |
Gly 1307 | - | expression tag |
Gly 1308 | - | expression tag |
Ser 1309 | - | expression tag |
Gly 1310 | - | expression tag |
Tyr 1311 | - | expression tag |
Ile 1312 | - | expression tag |
Pro 1313 | - | expression tag |
Glu 1314 | - | expression tag |
Ala 1315 | - | expression tag |
Pro 1316 | - | expression tag |
Arg 1317 | - | expression tag |
Asp 1318 | - | expression tag |
Gly 1319 | - | expression tag |
Gln 1320 | - | expression tag |
Ala 1321 | - | expression tag |
Tyr 1322 | - | expression tag |
Val 1323 | - | expression tag |
Arg 1324 | - | expression tag |
Lys 1325 | - | expression tag |
Asp 1326 | - | expression tag |
Gly 1327 | - | expression tag |
Glu 1328 | - | expression tag |
Trp 1329 | - | expression tag |
Val 1330 | - | expression tag |
Leu 1331 | - | expression tag |
Leu 1332 | - | expression tag |
Ser 1333 | - | expression tag |
Thr 1334 | - | expression tag |
Phe 1335 | - | expression tag |
Leu 1336 | - | expression tag |
Gly 1337 | - | expression tag |
His 1338 | - | expression tag |
His 1339 | - | expression tag |
His 1340 | - | expression tag |
His 1341 | - | expression tag |
His 1342 | - | expression tag |
His 1343 | - | expression tag |
His 1344 | - | expression tag |
His 1345 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 447516.2 | |
Branched | Number of molecules | 33 |
Total formula weight | 22977.0 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 5969.6 | |
All* | Total formula weight | 476462.8 |