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6PY9

Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine diphosphate metavanadate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, D, C)
Fe(3+)-Zn(2+) purple acid phosphatasepolymer45952926.44UniProt (P80366)
Pfam (PF16656)
Pfam (PF00149)
Pfam (PF14008)
Phaseolus vulgaris (Kidney bean)PAP,Iron(III)-zinc(II) purple acid phosphatase
2E, F, G, H
(E, F, G, H)
alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched570.54In PDB
GlyTouCan (G11971MR)
3FB, I, JA, VB
(D, A, B, C)
ZINC IONnon-polymer65.44Chemie (ZN)
4GB, J, KA, WB
(D, A, B, C)
FE (III) IONnon-polymer55.84Chemie (FE)
5HB, IB, JB, K, L...
(D, A, B, C)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.211Chemie (NAG)
6N, ZB
(A, C)
ADP METAVANADATEnon-polymer527.12Chemie (AD9)
7AC, KB, LB, MB, NB...
(C, D, A, B)
SULFATE IONnon-polymer96.111Chemie (SO4)
8PB, R, RA
(D, A, B)
SODIUM IONnon-polymer23.03Chemie (NA)
9AA, BC, CC, DC, EC...
(A, C, D, B)
1,2-ETHANEDIOLnon-polymer62.132Chemie (EDO)
10AB, BA, BB, CA, CB...
(B, A, C, D)
GLYCEROLnon-polymer92.113Chemie (GOL)
11DB, HA, IA, RC
(B, A, C)
TRIETHYLENE GLYCOLnon-polymer150.24Chemie (PGE)
12OA
(B)
[(2~{R},3~{R},4~{R},5~{S})-2-(5-azanylimidazol-1-yl)-4-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxy-bis(oxidanyl)vanadio]oxy-5-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxymethyl]oxolan-3-yl]oxy-tris(oxidanyl)vanadiumnon-polymer790.81Chemie (P4J)
13EB
(B)
CHLORIDE IONnon-polymer35.51Chemie (CL)
14PC, QC
(C)
CITRATE ANIONnon-polymer189.12Chemie (FLC)
15SC, TC, UC, VC
(A, B, D, C)
waterwater18.01301Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight211705.7
BranchedNumber of molecules4
Total formula weight2282.2
Non-Polymers*Number of molecules88
Total formula weight10086.8
All*Total formula weight224074.7
*Water molecules are not included.

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PDB entries from 2025-06-18

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