6PPH
Kaposi's sarcoma-associated herpesvirus (KSHV), C1 penton vertex register, CATC-binding structure
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (k) | Capsid vertex component 1 | polymer | 454 | 49586.6 | 1 | UniProt (Q76RH8) Pfam (PF04559) UniProt (by SIFTS) (F5HB39) | Human herpesvirus 8 (HHV-8) | |
| 2 | B, C (l, m) | Capsid vertex component 2 | polymer | 549 | 61494.4 | 2 | UniProt (Q76RI7) Pfam (PF01499) UniProt (by SIFTS) (Q2HRB3) | Human herpesvirus 8 (HHV-8) | |
| 3 | D, E (n, o) | Large tegument protein deneddylase | polymer | 2635 | 290024.8 | 2 | UniProt (Q2HR64) Pfam (PF04843) | Human herpesvirus 8 (HHV-8) | |
| 4 | F, I (5, b) | Triplex capsid protein 1 | polymer | 331 | 36374.8 | 2 | UniProt (Q76RF6) Pfam (PF03327) UniProt (by SIFTS) (F5H8Y5) | Human herpesvirus 8 (HHV-8) | |
| 5 | G, H, J, K (6, 7, c, d) | Triplex capsid protein 2 | polymer | 305 | 34278.5 | 4 | UniProt (C7E5A9) Pfam (PF01802) | Human herpesvirus 8 (HHV-8) | |
| 6 | L, O, Q, S, U (4, S, T, X, W) | Major capsid protein | polymer | 1376 | 153574.2 | 5 | UniProt (D0UZN7) Pfam (PF03122) UniProt (by SIFTS) (Q2HRA7) | Human herpesvirus 8 (HHV-8) | MCP |
| 7 | M, N, P, R, T (A, 2, 3, 1, 0) | Small capsomere-interacting protein | polymer | 170 | 18597.8 | 5 | UniProt (Q76RF4) Pfam (PF06112) UniProt (by SIFTS) (Q2HR63) | Human herpesvirus 8 (HHV-8) |
Sequence modifications
k: 1 - 454 (UniProt: Q76RH8)
n, o: 1 - 2635 (UniProt: Q2HR64)
| PDB | External Database | Details |
|---|---|---|
| Pro 165 | Leu 165 | conflict |
| Ser 281 | Gly 281 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 2220 | Pro 2220 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 1823348.6 | |
| All* | Total formula weight | 1823348.6 |
