6PPB

Kaposi's sarcoma-associated herpesvirus (KSHV), C5 portal vertex structure

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (k)	Capsid vertex component 1	polymer	454	49586.6	1	UniProt (Q76RH8) Pfam (PF04559) UniProt (by SIFTS) (F5HB39)	Human herpesvirus 8 (HHV-8)
2	B, C (l, m)	Capsid vertex component 2	polymer	549	61494.4	2	UniProt (Q76RI7) Pfam (PF01499) UniProt (by SIFTS) (Q2HRB3)	Human herpesvirus 8 (HHV-8)
3	D, E (n, o)	Large tegument protein deneddylase	polymer	2635	290024.8	2	UniProt (Q2HR64) Pfam (PF04843)	Human herpesvirus 8 (HHV-8)
4	F, G, H, I (S, T, W, X)	Major capsid protein	polymer	1376	153574.2	4	UniProt (Q2HRA7) Pfam (PF03122)	Human herpesvirus 8 (HHV-8)	MCP
5	J, M (b, 5)	Triplex capsid protein 1	polymer	331	36374.8	2	UniProt (Q76RF6) Pfam (PF03327) UniProt (by SIFTS) (F5H8Y5)	Human herpesvirus 8 (HHV-8)
6	K, L, N, O (c, d, 6, 7)	Triplex capsid protein 2	polymer	305	34278.5	4	UniProt (Q98832) Pfam (PF01802) UniProt (by SIFTS) (F5HGN8)	Human herpesvirus 8 (HHV-8)
7	P, Q, R, S (0, 1, 2, 3)	Small capsomere-interacting protein	polymer	170	18597.8	4	UniProt (Q76RF4) Pfam (PF06112) UniProt (by SIFTS) (Q2HR63)	Human herpesvirus 8 (HHV-8)

Sequence modifications

k: 1 - 454 (UniProt: Q76RH8)

PDB	External Database	Details
Pro 165	Leu 165	conflict
Ser 281	Gly 281	conflict

n, o: 1 - 2635 (UniProt: Q2HR64)

PDB	External Database	Details
Thr 2220	Pro 2220	conflict

S, T, W, X: 1 - 1376 (UniProt: Q2HRA7)

PDB	External Database	Details
Pro 1146	Ser 1146	conflict
Ala 1157	Thr 1157	conflict

c, d, 6, 7: 1 - 305 (UniProt: Q98832)

Sequence viewer

Contents of the asymmetric unit

*Water molecules are not included.