6PI0
AgaD472N-Linear Blood group B type 2 trisaccharide complex structure
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Alpha-galactosidase | polymer | 740 | 83967.2 | 1 | UniProt (A0A0H2URQ6) Pfam (PF16875) Pfam (PF02065) Pfam (PF16874) | Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) | |
| 2 | B (B) | alpha-D-galactopyranose-(1-3)-beta-D-galactopyranose | branched | 342.3 | 1 | In PDB GlyTouCan (G24432YB) | |||
| 3 | C (A) | L(+)-TARTARIC ACID | non-polymer | 150.1 | 1 | Chemie (TLA) | |||
| 4 | D, E, F, G, H... (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 5 | K (A) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) | |||
| 6 | L (A) | water | water | 18.0 | 452 | Chemie (HOH) |
Sequence modifications
A: 1 - 720 (UniProt: A0A0H2URQ6)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ser -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
| Asn 472 | Asp 472 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 83967.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 342.3 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 643.6 | |
| All* | Total formula weight | 84953.1 |
