6PDL
Crystal Structure of Hendra Virus Attachment G Glycoprotein in Complex with Receptor Ephrin-B2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | Attachment glycoprotein | polymer | 441 | 49431.1 | 4 | UniProt (F4YH71) Pfam (PF00423) UniProt (by SIFTS) (O89343) | Hendra henipavirus | Glycoprotein |
| 2 | B, D, F, H (B, D, F, H) | Ephrin-B2 | polymer | 141 | 16103.4 | 4 | UniProt (P52799) Pfam (PF00812) | Homo sapiens (Human) | EPH-related receptor tyrosine kinase ligand 5,LERK-5,HTK ligand,HTK-L |
| 3 | I, J, L, M, P... (I, J, L, M, P...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 4 | K, T (K, T) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1203.1 | 2 | In PDB GlyTouCan (G11460AB) | |||
| 5 | N (N) | beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1203.1 | 1 | In PDB GlyTouCan (G47385JB) | |||
| 6 | O, R (O, R) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 7 | Q (Q) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 878.8 | 1 | In PDB GlyTouCan (G92953ND) | |||
| 8 | AA, BA, CA, DA, EA... (E, F, G, H, A...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 13 | Chemie (NAG) | |||
| 9 | HA, IA, JA, KA, LA... (A, B, C, D, E...) | water | water | 18.0 | 425 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 171 - 604 (UniProt: F4YH71)
| PDB | External Database | Details |
|---|---|---|
| Gly 605 | - | expression tag |
| Arg 606 | - | expression tag |
| Gly 607 | - | expression tag |
| Leu 608 | - | expression tag |
| Val 609 | - | expression tag |
| Pro 610 | - | expression tag |
| Arg 611 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 262138.0 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 8207.6 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 2875.7 | |
| All* | Total formula weight | 273221.3 |
