6P5J
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S rRNA | polymer | 1869 | 602776.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 2 | B (B) | uS2 | polymer | 295 | 33003.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 3 | C (C) | eS1 | polymer | 264 | 30002.1 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (Rabbit) | |
| 4 | D (D) | uS5 | polymer | 255 | 27485.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 5 | E (E) | uS3 | polymer | 281 | 31146.6 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) | Oryctolagus cuniculus (Rabbit) | |
| 6 | F (F) | eS4 | polymer | 263 | 29658.9 | 1 | UniProt (G1TK17) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Oryctolagus cuniculus (Rabbit) | |
| 7 | G (G) | uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (Rabbit) | |
| 8 | H (H) | eS6 | polymer | 249 | 28751.9 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (Rabbit) | |
| 9 | I (I) | eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) | Oryctolagus cuniculus (Rabbit) | |
| 10 | J (J) | eS8 | polymer | 207 | 24134.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 11 | K (K) | uS4 | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (Rabbit) | |
| 12 | L (L) | eS10 | polymer | 149 | 17156.9 | 1 | UniProt (G1TPV3) Pfam (PF03501) | Oryctolagus cuniculus (Rabbit) | |
| 13 | M (M) | uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (Rabbit) | |
| 14 | N (N) | eS12 | polymer | 132 | 14539.0 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 15 | O (O) | uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (Rabbit) | |
| 16 | P (P) | uS11 | polymer | 151 | 16302.8 | 1 | UniProt (G1U472) Pfam (PF00411) UniProt (by SIFTS) (G1T1F0) | Oryctolagus cuniculus (Rabbit) | |
| 17 | Q (Q) | uS19 | polymer | 145 | 17049.2 | 1 | UniProt (G1U0Q2) Pfam (PF00203) | Oryctolagus cuniculus (Rabbit) | |
| 18 | R (R) | uS9 | polymer | 172 | 19213.5 | 1 | UniProt (G1SGX4) Pfam (PF00380) | Oryctolagus cuniculus (Rabbit) | |
| 19 | S (S) | eS17 | polymer | 135 | 15552.1 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (Rabbit) | |
| 20 | T (T) | uS13 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (Rabbit) | |
| 21 | U (U) | eS19 | polymer | 145 | 16235.8 | 1 | UniProt (G1TN62) Pfam (PF01090) | Oryctolagus cuniculus (Rabbit) | |
| 22 | V (V) | uS10 | polymer | 119 | 13398.8 | 1 | UniProt (G1SIZ2) Pfam (PF00338) | Oryctolagus cuniculus (Rabbit) | |
| 23 | W (W) | eS21 | polymer | 83 | 9043.3 | 1 | UniProt (G1TM82) Pfam (PF01249) | Oryctolagus cuniculus (Rabbit) | |
| 24 | X (X) | uS8 | polymer | 130 | 14865.6 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (Rabbit) | |
| 25 | Y (Y) | uS12 | polymer | 143 | 15784.5 | 1 | UniProt (G1SZ47) Pfam (PF00164) | Oryctolagus cuniculus (Rabbit) | |
| 26 | Z (Z) | eS24 | polymer | 134 | 15548.4 | 1 | UniProt (G1T3D8) Pfam (PF01282) | Oryctolagus cuniculus (Rabbit) | |
| 27 | AA (a) | eS25 | polymer | 125 | 13776.2 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (Rabbit) | |
| 28 | BA (b) | eS26 | polymer | 115 | 12961.5 | 1 | UniProt (G1TFE8) Pfam (PF01283) | Oryctolagus cuniculus (Rabbit) | |
| 29 | CA (c) | eS27 | polymer | 84 | 9480.2 | 1 | UniProt (G1TZ76) Pfam (PF01667) | Oryctolagus cuniculus (Rabbit) | |
| 30 | DA (d) | eS28 | polymer | 69 | 7855.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (Rabbit) | |
| 31 | EA (e) | eS29 | polymer | 56 | 6690.8 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (Rabbit) | |
| 32 | FA (f) | eS30 | polymer | 133 | 14498.9 | 1 | UniProt (G1T8A2) Pfam (PF00240) Pfam (PF04758) | Oryctolagus cuniculus (Rabbit) | |
| 33 | GA (g) | eS31 | polymer | 156 | 18004.0 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (Rabbit) | |
| 34 | HA (h) | RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (Rabbit) | |
| 35 | IA (1) | IAPV-IRES | polymer | 253 | 81572.1 | 1 | Israeli acute paralysis virus | ||
| 36 | JA (5) | 28S rRNA | polymer | 3594 | 1164741.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 37 | KA (7) | 5S rRNA | polymer | 119 | 38385.8 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 38 | LA (8) | 5.8S rRNA | polymer | 156 | 50143.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 39 | MA (AA) | uL2 | polymer | 257 | 28088.9 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) | Oryctolagus cuniculus (Rabbit) | |
| 40 | NA (AB) | uL3 | polymer | 402 | 45976.8 | 1 | UniProt (G1TL06) Pfam (PF00297) | Oryctolagus cuniculus (Rabbit) | |
| 41 | OA (AC) | uL4 | polymer | 392 | 44232.2 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) | Oryctolagus cuniculus (Rabbit) | |
| 42 | PA (AD) | uL18 | polymer | 297 | 34479.8 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) | Oryctolagus cuniculus (Rabbit) | |
| 43 | QA (AE) | eL6 | polymer | 291 | 33028.3 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) | Oryctolagus cuniculus (Rabbit) | |
| 44 | RA (AF) | uL30 | polymer | 249 | 29514.3 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) | Oryctolagus cuniculus (Rabbit) | |
| 45 | SA (AG) | eL8 | polymer | 242 | 27655.8 | 1 | UniProt (G1STW0) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 46 | TA (AH) | uL6 | polymer | 192 | 21871.4 | 1 | UniProt (G1TX33) Pfam (PF00347) UniProt (by SIFTS) (G1SWI6) | Oryctolagus cuniculus (Rabbit) | |
| 47 | UA (AI) | uL16 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 48 | VA (AJ) | uL11 | polymer | 178 | 20288.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) | Oryctolagus cuniculus (Rabbit) | |
| 49 | WA (AL) | eL13 | polymer | 211 | 24331.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 50 | XA (AM) | L14e | polymer | 198 | 21950.3 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) | Oryctolagus cuniculus (Rabbit) | |
| 51 | YA (AN) | eL15 | polymer | 204 | 24207.3 | 1 | UniProt (G1T0C1) Pfam (PF00827) | Oryctolagus cuniculus (Rabbit) | |
| 52 | ZA (AO) | uL13 | polymer | 203 | 23547.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 53 | AB (AP) | uL22 | polymer | 184 | 21444.2 | 1 | UniProt (G1TVT6) Pfam (PF00237) UniProt (by SIFTS) (G1SCJ6) | Oryctolagus cuniculus (Rabbit) | |
| 54 | BB (AQ) | eL18 | polymer | 188 | 21821.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 55 | CB (AR) | eL19 | polymer | 196 | 23480.2 | 1 | UniProt (G1TJR3) Pfam (PF01280) | Oryctolagus cuniculus (Rabbit) | |
| 56 | DB (AS) | eL20 | polymer | 176 | 20743.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 57 | EB (AT) | eL21 | polymer | 160 | 18610.0 | 1 | UniProt (G1SHQ2) Pfam (PF01157) | Oryctolagus cuniculus (Rabbit) | |
| 58 | FB (AU) | eL22 | polymer | 128 | 14936.1 | 1 | UniProt (G1TSG1) Pfam (PF01776) | Oryctolagus cuniculus (Rabbit) | |
| 59 | GB (AV) | uL14 | polymer | 140 | 14892.5 | 1 | UniProt (G1T6D1) Pfam (PF00238) | Oryctolagus cuniculus (Rabbit) | |
| 60 | HB (AW) | eL24 | polymer | 157 | 17825.1 | 1 | UniProt (G1SE28) Pfam (PF01246) | Oryctolagus cuniculus (Rabbit) | |
| 61 | IB (AX) | eL23 | polymer | 156 | 17768.2 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) | Oryctolagus cuniculus (Rabbit) | |
| 62 | JB (AY) | uL24 | polymer | 145 | 17303.4 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) | Oryctolagus cuniculus (Rabbit) | |
| 63 | KB (AZ) | eL27 | polymer | 136 | 15835.8 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) | Oryctolagus cuniculus (Rabbit) | |
| 64 | LB (Aa) | uL15 | polymer | 148 | 16617.5 | 1 | UniProt (G1SNY0) Pfam (PF00828) | Oryctolagus cuniculus (Rabbit) | |
| 65 | MB (Ab) | eL29 | polymer | 226 | 24931.6 | 1 | UniProt (G1SGR6) Pfam (PF01779) | Oryctolagus cuniculus (Rabbit) | |
| 66 | NB (Ac) | eL30 | polymer | 115 | 12807.1 | 1 | UniProt (G1TDL2) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 67 | OB (Ad) | eL31 | polymer | 125 | 14494.9 | 1 | UniProt (G1SHG0) Pfam (PF01198) | Oryctolagus cuniculus (Rabbit) | |
| 68 | PB (Ae) | eL32 | polymer | 135 | 15898.9 | 1 | UniProt (G1U437) Pfam (PF01655) UniProt (by SIFTS) (G1TUN8) | Oryctolagus cuniculus (Rabbit) | |
| 69 | QB (Af) | eL33 | polymer | 110 | 12580.8 | 1 | UniProt (G1SF08) Pfam (PF01247) | Oryctolagus cuniculus (Rabbit) | |
| 70 | RB (Ag) | eL34 | polymer | 126 | 14210.1 | 1 | UniProt (G1U945) Pfam (PF01199) UniProt (by SIFTS) (G1TXG5) | Oryctolagus cuniculus (Rabbit) | |
| 71 | SB (Ah) | eL35 | polymer | 123 | 14566.6 | 1 | UniProt (G1SIT5) Pfam (PF00831) | Oryctolagus cuniculus (Rabbit) | |
| 72 | TB (Ai) | eL36 | polymer | 105 | 12263.8 | 1 | UniProt (G1TTQ5) Pfam (PF01158) | Oryctolagus cuniculus (Rabbit) | |
| 73 | UB (Aj) | eL37 | polymer | 97 | 11111.0 | 1 | UniProt (U3KPD5) Pfam (PF01907) | Oryctolagus cuniculus (Rabbit) | |
| 74 | VB (Ak) | eL38 | polymer | 70 | 8272.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 75 | WB (Al) | eL39 | polymer | 51 | 6455.8 | 1 | UniProt (G1TTN1) Pfam (PF00832) | Oryctolagus cuniculus (Rabbit) | |
| 76 | XB (Am) | eL40 | polymer | 52 | 6199.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 77 | YB (An) | eL41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) | Oryctolagus cuniculus (Rabbit) | |
| 78 | ZB (Ao) | eL42 | polymer | 106 | 12477.0 | 1 | UniProt (G1U344) Pfam (PF00935) UniProt (by SIFTS) (G1T040) | Oryctolagus cuniculus (Rabbit) | |
| 79 | AC (Ap) | eL43 | polymer | 92 | 10299.4 | 1 | UniProt (G1SY53) Pfam (PF01780) | Oryctolagus cuniculus (Rabbit) | |
| 80 | BC (Ar) | eL28 | polymer | 137 | 15783.6 | 1 | UniProt (G1U7L1) Pfam (PF01778) | Oryctolagus cuniculus (Rabbit) | |
| 81 | CC (AK) | uL1 | polymer | 217 | 24879.4 | 1 | UniProt (G1SKZ8) Pfam (PF00687) | Oryctolagus cuniculus (Rabbit) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 81 |
| Total formula weight | 3411885.2 | |
| All* | Total formula weight | 3411885.2 |
