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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6OXI

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1QA, XA16S rRNApolymer1521493652.22GenBank (55771382)Thermus thermophilus HB8 (strain HB8 / ATCC 27634 / DSM 579)
2QB, XB30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3QC, XC30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4QD, XD30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5QE, XE30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6QF, XF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7QG, XG30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8QH, XH30S ribosomal protein S8polymer13815868.62UniProt (P0DOY9)
Pfam (PF00410)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9QI, XI30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10QJ, XJ30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11QK, XK30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12QL, XL30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13QM, XM30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14QN, XN30S ribosomal protein S14 type Zpolymer617158.72UniProt (P0DOY6)
Pfam (PF00253)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15QO, XO30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16QP, XP30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17QQ, XQ30S ribosomal protein S17polymer10512325.72UniProt (P0DOY7)
Pfam (PF00366)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18QR, XR30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19QS, XS30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20QT, XT30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21QU, XU30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
22QV, XVP-site tRNA-fMetpolymer7724802.82GenBank (1384458579)Escherichia coli
23QX, XXmRNApolymer206598.02Escherichia coli
24QY, QZ, XY, XZAddiction module toxin, Txe/YoeB familypolymer8410233.74UniProt (J7QFC0)
Pfam (PF06769)
In PDB		Escherichia coliToxin,Toxin of the YoeB-YefM toxin-antitoxin pair,Txe/YoeB family addiction module toxin,YoeB toxin protein,toxin YoeB,toxin of the YoeB-YefM Toxin-antitoxin system
25R0, Y050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26R1, Y150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27R2, Y250S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28R3, Y350S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29R4, Y450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30R5, Y550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31R6, Y650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32R7, Y750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33R8, Y850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34R9, Y950S ribosomal protein L36polymer374435.42UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Ribosomal protein B
35RA, YA23S rRNApolymer2915947895.42GenBank (55771382)Thermus thermophilus HB8 (strain HB8 / ATCC 27634 / DSM 579)
36RB, YB5S rRNApolymer12440152.92GenBank (55771382)Thermus thermophilus HB8 (strain HB8 / ATCC 27634 / DSM 579)
37RD, YD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38RE, YE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39RF, YF50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
40RG, YG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41RH, YH50S ribosomal protein L6polymer18019568.92UniProt (P0DOY8)
Pfam (PF00347)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42RI, YI50S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43RN, YN50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44RO, YO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45RP, YP50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46RQ, YQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47RR, YR50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48RS, YS50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL24
49RT, YT50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50RU, YU50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51RV, YV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52RW, YW50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53RX, YX50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54RY, YY50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
55RZ, YZ50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL5
56ZA, ZBCCPuropolymer31098.92Streptomyces alboniger
57YA, QA, RA, XA, Y1...MAGNESIUM IONnon-polymer24.3890Chemie (MG)
58QD, XDIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
59QN, Y4, Y6, R4, R5...ZINC IONnon-polymer65.48Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains114
Total formula weight4444054.3
Non-Polymers*Number of molecules900
Total formula weight22858.0
All*Total formula weight4466912.3
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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